CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43775	Canola	cytosol, mitochondrion	99.45	98.37
Bra024254.1-P	Field mustard	mitochondrion	98.9	98.09
CDY31343	Canola	cytosol	91.74	90.74
AT5G63970.1	Thale cress	cytosol	91.74	90.74
CDY39835	Canola	cytosol	91.18	90.19
VIT_04s0044g01620.t01	Wine grape	cytosol	67.49	66.76
GSMUA_Achr10P...	Banana	nucleus	66.94	63.61
Solyc09g065870.2.1	Tomato	nucleus	72.18	62.38
TraesCS3A01G503400.1	Wheat	cytosol	65.29	62.04
KXG34172	Sorghum	nucleus	65.84	61.76
TraesCS3D01G510000.1	Wheat	cytosol	58.4	61.63
TraesCS3B01G566800.1	Wheat	cytosol	64.19	61.48
Os01t0960500-01	Rice	plasma membrane	65.01	60.98
KRH59596	Soybean	nucleus	71.35	60.8
GSMUA_Achr5P25930_001	Banana	extracellular	39.39	60.34
KRH64018	Soybean	nucleus	71.63	60.19
CDX99619	Canola	cytosol	10.74	57.35
CDY50776	Canola	cytosol	11.57	56.76
CDX67997	Canola	cytosol	57.58	55.29
CDX79314	Canola	cytosol, plastid	57.58	55.15
CDX84957	Canola	cytosol	58.4	55.06
Zm00001d006136_P001	Maize	cytosol	14.6	54.64
Zm00001d011821_P007	Maize	cytosol	63.36	53.61
GSMUA_Achr5P25940_001	Banana	cytosol	31.96	53.46
CDY27584	Canola	cytosol	33.61	52.59
CDX88533	Canola	plastid	57.3	51.61
CDX87387	Canola	plastid	56.47	50.99
KRH40948	Soybean	nucleus	48.48	49.3
CDX85597	Canola	cytosol, plastid	61.16	49.22
CDX91062	Canola	cytosol, plastid	61.16	49.12
CDX74310	Canola	cytosol	61.43	48.69
CDX91935	Canola	cytosol	61.16	48.58
CDY49066	Canola	cytosol	61.43	48.48
CDY37509	Canola	cytosol	61.43	48.48
CDY01855	Canola	cytosol, plastid	58.68	48.3
CDY56212	Canola	plastid	58.4	48.07
CDY09854	Canola	nucleus, plastid	60.61	47.21
CDX69581	Canola	nucleus, plastid	60.33	47.0
CDX70564	Canola	cytosol, plastid	60.88	46.92
HORVU3Hr1G110870.14	Barley	mitochondrion	61.43	46.75
CDX78576	Canola	cytosol, plastid	60.61	46.71
KRH53919	Soybean	nucleus	47.11	45.6
HORVU3Hr1G110850.8	Barley	cytosol	42.7	44.54
CDY49067	Canola	extracellular	18.18	44.0
TraesCS3A01G503300.1	Wheat	cytosol	57.02	43.31
TraesCS3D01G509900.2	Wheat	cytosol	57.02	43.22
TraesCS3B01G566700.1	Wheat	cytosol	55.92	41.77
CDY27585	Canola	cytosol	14.88	41.54
CDX85680	Canola	mitochondrion, plastid	12.4	30.61
CDY52873	Canola	plastid	24.24	28.76
CDX72278	Canola	plastid	27.0	26.42
CDX98983	Canola	cytosol, plastid	17.08	25.31
CDY03984	Canola	cytosol	20.66	25.25
CDY25816	Canola	cytosol	2.48	18.37
CDX98984	Canola	cytosol	22.59	13.97
CDX70026	Canola	cytosol	22.59	13.92
CDX78287	Canola	cytosol	21.76	13.46
CDY00235	Canola	cytosol	21.49	13.45
CDX81044	Canola	cytosol	21.49	13.29
CDX86951	Canola	cytosol	20.94	13.1
CDY06335	Canola	cytosol	20.11	12.52
CDY22660	Canola	cytosol	19.83	12.39

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	GO:A0A078D591	EnsemblPlants:CDX84471	ProteinID:CDX84471
ProteinID:CDX84471.1	InterPro:Copine	EnsemblPlantsGene:GSBRNA2T00141686001	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083
InterPro:IPR036465	PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF98
SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0004EDC84A	InterPro:VWF_A
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

BnaC03g50290D

Coordinates

chrLK031837:-:1325249..1327162

Molecular Weight (calculated)

40958.9 Da

IEP (calculated)

7.283

GRAVY (calculated)

-0.389

Length

363 amino acids

Sequence
(BLAST)

001: MNRYNQRNQQ PSFIADHFQS LDQVITSLRE AGLESSNLIL GIDFTKSNEW TGRHSFNRKS LHAIGKRQNP YEQAISIIGR TLSPFDEDDL IPCFGFGDVT
101: TRDQYVFSFY PENKSCDGFE NAVKRYREIV PHLKLSGPTS FAPIINAAID IVEQNNMQYH VLVIIADGQV TRNPDLPFGR LSPQEEATMN SIVAASHYPL
201: SIVLVGVGDG PWDTMKQFDD NIPHRKFDNF QFVNFTEIMS EHKDAAKKEA AFALAALMEI PFQYKATLSL DRKQVRASRL HHKPLPPPPE VIERDNAVRA
301: VPNPVTETAE KSERTAPVCP ICLTKPKDMA FSCGHTTCKE CGVVVKTCPM CRQPITTRIR LYT

Best Arabidopsis Sequence Match ( AT5G63970.2 )
(BLAST)

001: MNMSNKRNQQ PSYIADHFSS LDQVITSLRE AGLESSNLIL GIDFTKSNEW TGRYSFNRKS LHAIGKRQNP YEKAISIIGR TLSPFDEDDL IPCFGFGDVT
101: TRDQYVFSFY PENKSCDGLE NAVKRYREIV PHLKLSGPTS FAPVIDAAIN IVEQNNMQYH VLVIIADGQV TRNPDVPLGR LSPQEEATMN SIMAASHYPL
201: SIVLVGVGDG PWDTMKQFDD NIPHREFDNF QFVNFTKIMS EHKDAAKKEA AFALAALMEI PFQYKATLSL NRKPVRSSHQ HHKPLPPPPE VIERDNAVRS
301: VPNQMTETAE KSDRLAPSTV PVCPICLTNP KDMAFSCGHT TCKECGVVIT TCPLCRQPIT TRIRLYT

Arabidopsis Description

RGLG3E3 ubiquitin-protein ligase RGLG3 [Source:UniProtKB/Swiss-Prot;Acc:Q8RX26]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.