Factsheet for GSMUA_Achr5P25930_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 3
plastid 1
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84471	Canola	cytosol, mitochondrion	60.34	39.39
AT5G63970.1	Thale cress	cytosol	60.76	39.24
CDY43775	Canola	cytosol, mitochondrion	60.76	39.24
Bra024254.1-P	Field mustard	mitochondrion	60.34	39.07
VIT_04s0044g01620.t01	Wine grape	cytosol	60.34	38.96
CDY31343	Canola	cytosol	59.92	38.69
GSMUA_Achr10P...	Banana	nucleus	62.03	38.48
CDY39835	Canola	cytosol	59.07	38.15
Bra031942.1-P	Field mustard	cytosol, mitochondrion, nucleus	51.9	35.96
Solyc09g065870.2.1	Tomato	nucleus	62.03	35.0
KRH59596	Soybean	nucleus	60.34	33.57
KRH64018	Soybean	nucleus	60.34	33.1
GSMUA_Achr4P09310_001	Banana	endoplasmic reticulum, golgi	48.95	31.44
GSMUA_Achr2P05470_001	Banana	nucleus	49.37	31.28
GSMUA_AchrUn_...	Banana	mitochondrion	54.43	31.01
GSMUA_Achr8P01300_001	Banana	nucleus	56.12	30.65
GSMUA_Achr7P03440_001	Banana	cytosol	38.82	29.39
GSMUA_Achr9P12830_001	Banana	cytosol, mitochondrion, nucleus, plastid	49.79	28.85
GSMUA_Achr6P06710_001	Banana	nucleus	54.85	28.26
GSMUA_Achr9P29460_001	Banana	nucleus	55.27	27.99
KRH40948	Soybean	nucleus	39.24	26.05
KRH53919	Soybean	nucleus	40.51	25.6
GSMUA_Achr7P20180_001	Banana	cytosol, nucleus, plastid	13.5	17.88
GSMUA_AchrUn_...	Banana	cytosol	10.55	13.44
GSMUA_AchrUn_...	Banana	cytosol, golgi, plastid	18.14	9.82
GSMUA_Achr5P08050_001	Banana	cytosol	16.88	6.73
GSMUA_Achr5P25940_001	Banana	cytosol	5.91	6.45

Protein Annotations

EnsemblPlants:GSMUA_Achr5P25930_001	EnsemblPlants:GSMUA_Achr5T25930_001	EnsemblPlantsGene:GSMUA_Achr5G25930_001	Gene3D:3.30.40.10	InterPro:Copine	InterPro:IPR001841
InterPro:IPR013083	InterPro:IPR036465	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:vWFA_dom_sf	PANTHER:PTHR10857
PANTHER:PTHR10857:SF98	PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	SEG:seg	SUPFAM:SSF53300
SUPFAM:SSF57850	UniParc:UPI00029529FB	UniProt:M0T1R8	MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	:

Description

E3 ubiquitin-protein ligase RGLG2 [Source:GMGC_GENE;Acc:GSMUA_Achr5G25930_001]

Coordinates

chr5:-:26899481..26902130

Molecular Weight (calculated)

26247.4 Da

IEP (calculated)

7.469

GRAVY (calculated)

-0.259

Length

237 amino acids

Sequence
(BLAST)

001: MITKFSGPTS FAPLILAAID IVEQSNWQYH VLVIVADGQV TKGSTLPNGF SQQEQATIDA IVEASHYPLS IIMIGVGDGP WDAMHQFDDY VPQRSFDNFQ
101: FVNFTKIMSE NMPMTKKEAA FALSALMEIP LQYRATQGLK RKKNNEGKAS WEKPLPPPRA VVDHDNAKSS KSSHGHAKYT NPDEYSIPVE RACPICLTNP
201: KDLAFSCGHL TCRDCGTAIP TCPICRSPIT TRLRLFS

Best Arabidopsis Sequence Match ( AT1G67800.1 )
(BLAST)

001: MGGSSSKESP RGGGSGRRYE RSVSGSSSYS SAWDQSSYYQ TPNHPSASPV SSYNSGRQTP KNLERKYSRI ADNYRSIDEV TAALSHAGLE SSNLIVGIDV
101: TKSNEWTGAR SFGRKSLHFI GTTPNPYQQA ISIIGKTLSV FDEDNLIPCY GFGDATTHDQ DVFSFNPNDT YCNGFEEVLM CYREIVPQLR LSGPTSFAPI
201: IERAMTIVEE SGGQYHVLLI IADGQVTRSV DTDNGGFSPQ EQQTIDAIVR ASEYPLSIVL VGVGDGPWDT MRQFDDNIPA RAFDNFQFVN FTDIMSKNID
301: PARKEAEFAL SALMEIPSQY KATLELGLLG QRTGHCPDRI ALPPPTYATQ SMRNSPRTSR STSFQNKPYD NGVSSTPPST THNESQQQFC PVCLVSAKNM
401: AFNCGHQTCA GCGEDLHVCP ICRSSISVRI KLY

Arabidopsis Description

Copine (Calcium-dependent phospholipid-binding protein) family [Source:UniProtKB/TrEMBL;Acc:F4HTR6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.