CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64018	Soybean	nucleus	76.76	75.69
AT5G63970.1	Thale cress	cytosol	61.74	71.66
CDX84471	Canola	cytosol, mitochondrion	60.8	71.35
Bra024254.1-P	Field mustard	mitochondrion	60.8	70.77
CDY43775	Canola	cytosol, mitochondrion	60.8	70.57
CDY31343	Canola	cytosol	60.33	70.03
VIT_04s0044g01620.t01	Wine grape	cytosol	60.09	69.75
KRH40948	Soybean	nucleus	58.45	69.75
Bra031942.1-P	Field mustard	cytosol, mitochondrion, nucleus	55.87	69.59
CDY39835	Canola	cytosol	59.39	68.94
Solyc09g065870.2.1	Tomato	nucleus	65.26	66.19
KXG34172	Sorghum	nucleus	57.98	63.82
GSMUA_Achr10P...	Banana	nucleus	57.04	63.61
TraesCS3A01G503400.1	Wheat	cytosol	56.81	63.35
TraesCS3B01G566800.1	Wheat	cytosol	56.1	63.06
Os01t0960500-01	Rice	plasma membrane	57.28	63.05
TraesCS3D01G510000.1	Wheat	cytosol	50.47	62.5
KRH43661	Soybean	cytosol	48.83	61.9
GSMUA_Achr5P25930_001	Banana	extracellular	33.57	60.34
KRH07106	Soybean	cytosol, plastid	41.08	60.14
KRG94356	Soybean	nucleus	57.04	56.78
GSMUA_Achr5P25940_001	Banana	cytosol	28.87	56.68
KRH63659	Soybean	cytosol, mitochondrion, nucleus, plastid	56.1	55.97
KRH54288	Soybean	cytosol, mitochondrion, nucleus, plastid	55.63	55.37
Zm00001d011821_P007	Maize	cytosol	55.63	55.24
Zm00001d006136_P001	Maize	cytosol	12.44	54.64
KRH53919	Soybean	nucleus	46.24	52.53
KRH13149	Soybean	cytosol, plastid	51.17	52.28
KRH59243	Soybean	endoplasmic reticulum, golgi	56.1	51.96
KRH44829	Soybean	nucleus, plastid	51.17	51.29
KRH43098	Soybean	endoplasmic reticulum, golgi	55.16	51.09
KRG97516	Soybean	golgi, plasma membrane	53.76	49.89
KRH58251	Soybean	nucleus	57.04	49.49
KRH31355	Soybean	golgi, plasma membrane	53.52	49.24
KRG93947	Soybean	nucleus	57.04	48.99
HORVU3Hr1G110870.14	Barley	mitochondrion	53.05	47.38
TraesCS3A01G503300.1	Wheat	cytosol	52.82	47.07
KRH07102	Soybean	cytosol	15.26	46.43
TraesCS3D01G509900.2	Wheat	cytosol	52.11	46.35
TraesCS3B01G566700.1	Wheat	cytosol	51.41	45.06
HORVU3Hr1G110850.8	Barley	cytosol	36.62	44.83
KRG95016	Soybean	nucleus, peroxisome, plasma membrane	35.45	41.71
KRH20017	Soybean	cytosol	16.2	25.27
KRH54085	Soybean	cytosol	21.83	16.09
KRH68626	Soybean	cytosol	21.36	15.69
KRH41052	Soybean	endoplasmic reticulum	21.36	15.69
KRG96891	Soybean	cytosol	21.36	15.32
KRH68625	Soybean	cytosol	21.13	15.23
KRH63871	Soybean	cytosol	21.83	14.95
KRH13085	Soybean	extracellular, vacuole	16.2	13.22
KRH44834	Soybean	plasma membrane	15.02	13.06
KRH44837	Soybean	extracellular, golgi	15.49	12.79
KRH13151	Soybean	nucleus, vacuole	15.73	12.55

Protein Annotations

EntrezGene:100791316	MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	EMBL:ACUP02003334	InterPro:Copine
EnsemblPlantsGene:GLYMA_05G193500	UniProt:I1K512	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465
EnsemblPlants:KRH59596	ProteinID:KRH59596	ProteinID:KRH59596.1	PFAM:PF07002	PFAM:PF13920	PFscan:PS50089
PANTHER:PTHR10857	PANTHER:PTHR10857:SF104	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850
UniParc:UPI000233A278	InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf

Description

hypothetical protein

Coordinates

chr5:+:37844420..37850518

Molecular Weight (calculated)

47319.9 Da

IEP (calculated)

6.040

GRAVY (calculated)

-0.498

Length

426 amino acids

Sequence
(BLAST)

001: MGNEESTHDS HDDFFRQPRS HDGSSPNTSH QYHQPPSYDG SSANTSHQYH QPSSYAGSSV NTRHQYKQRP TYIADSFSSL DQVVSALREA GLESSNLIIG
101: IDFTKSNEWT GKHSFNHKSL HFTGNTPNPY EQAISIIGRT LSSFDEDNLI PCFGFGDAST HDQNVFSFYP DECYCHGFEQ VLARYREIVP HLKLAGPTSF
201: APVIDAAVGI VERSNGQYHV LVIIADGQVT RNSDTPHGKF SPQEQATINS IIAASHYPLS IILVGVGDGP WDEMQHFDDN ITQRLFDNFQ FVNFTKITSE
301: NKDASKKEAA FALAALMEIP IQYRITQNLQ IANENPTSHQ RKRPLPPPKE VIDRDNAVLA VPHVPNFESV EPSAPAAVES VCPICLTNPK DMAFGCGHTT
401: CKECGVTLSS CPMCRQEITT RLRLYT

Best Arabidopsis Sequence Match ( AT5G63970.2 )
(BLAST)

001: MNMSNKRNQQ PSYIADHFSS LDQVITSLRE AGLESSNLIL GIDFTKSNEW TGRYSFNRKS LHAIGKRQNP YEKAISIIGR TLSPFDEDDL IPCFGFGDVT
101: TRDQYVFSFY PENKSCDGLE NAVKRYREIV PHLKLSGPTS FAPVIDAAIN IVEQNNMQYH VLVIIADGQV TRNPDVPLGR LSPQEEATMN SIMAASHYPL
201: SIVLVGVGDG PWDTMKQFDD NIPHREFDNF QFVNFTKIMS EHKDAAKKEA AFALAALMEI PFQYKATLSL NRKPVRSSHQ HHKPLPPPPE VIERDNAVRS
301: VPNQMTETAE KSDRLAPSTV PVCPICLTNP KDMAFSCGHT TCKECGVVIT TCPLCRQPIT TRIRLYT

Arabidopsis Description

RGLG3E3 ubiquitin-protein ligase RGLG3 [Source:UniProtKB/Swiss-Prot;Acc:Q8RX26]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.