CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13149	Soybean	cytosol, plastid	92.47	94.24
KRH43661	Soybean	cytosol	63.29	80.06
CDX67997	Canola	cytosol	61.41	69.05
CDX79314	Canola	cytosol, plastid	61.18	68.6
VIT_19s0085g01000.t01	Wine grape	extracellular	61.65	68.05
CDX99619	Canola	cytosol	10.59	66.18
CDX88533	Canola	plastid	62.59	66.0
CDX87387	Canola	plastid	62.35	65.92
AT1G79380.1	Thale cress	mitochondrion	62.12	65.84
Bra035112.1-P	Field mustard	plastid	62.12	65.67
CDY50776	Canola	cytosol	11.06	63.51
GSMUA_Achr7P03440_001	Banana	cytosol	45.88	62.3
Os08t0135400-01	Rice	plasma membrane	58.59	62.09
GSMUA_AchrUn_...	Banana	mitochondrion	59.06	60.34
TraesCS7A01G308900.1	Wheat	mitochondrion	56.71	60.1
Zm00001d035211_P001	Maize	mitochondrion	56.94	59.9
Solyc05g053870.2.1	Tomato	plastid	63.53	59.87
EES13310	Sorghum	mitochondrion	57.18	59.56
TraesCS7D01G305600.1	Wheat	mitochondrion	56.24	58.87
PGSC0003DMT400040712	Potato	nucleus, plastid	63.06	55.37
TraesCS7B01G208900.1	Wheat	mitochondrion	54.35	55.0
KRH63659	Soybean	cytosol, mitochondrion, nucleus, plastid	54.35	54.1
KRH54288	Soybean	cytosol, mitochondrion, nucleus, plastid	53.18	52.8
KRH07106	Soybean	cytosol, plastid	35.76	52.23
KRH64018	Soybean	nucleus	52.24	51.39
KRH59596	Soybean	nucleus	51.29	51.17
KRG94356	Soybean	nucleus	51.06	50.7
KRH43098	Soybean	endoplasmic reticulum, golgi	54.82	50.65
KRH59243	Soybean	endoplasmic reticulum, golgi	54.59	50.43
KRG97516	Soybean	golgi, plasma membrane	52.47	48.58
KRH58251	Soybean	nucleus	56.0	48.47
KRH31355	Soybean	golgi, plasma membrane	52.47	48.16
KRG93947	Soybean	nucleus	55.06	47.18
KRH07102	Soybean	cytosol	15.53	47.14
KRH40948	Soybean	nucleus	37.18	44.26
KRH53919	Soybean	nucleus	34.35	38.93
KRG95016	Soybean	nucleus, peroxisome, plasma membrane	32.71	38.4
KRH20017	Soybean	cytosol	15.53	24.18
KRH54085	Soybean	cytosol	20.47	15.05
KRH68626	Soybean	cytosol	20.0	14.66
KRH41052	Soybean	endoplasmic reticulum	20.0	14.66
KRH68625	Soybean	cytosol	19.53	14.04
KRH13085	Soybean	extracellular, vacuole	17.18	13.98
KRH63871	Soybean	cytosol	20.24	13.83
KRG96891	Soybean	cytosol	19.29	13.8
KRH44837	Soybean	extracellular, golgi	16.71	13.76
KRH13151	Soybean	nucleus, vacuole	16.24	12.92
KRH44834	Soybean	plasma membrane	14.35	12.45

Protein Annotations

EntrezGene:100795579	MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	EMBL:ACUP02004967	InterPro:Copine
EnsemblPlantsGene:GLYMA_08G234200	UniProt:I1KW41	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465
EnsemblPlants:KRH44829	ProteinID:KRH44829	ProteinID:KRH44829.1	ProteinID:KRH44830.1	ProteinID:KRH44831.1	PFAM:PF07002
PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF47	SMART:SM00184	SMART:SM00327
SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0002337C98	InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	InterPro:vWFA_dom_sf	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:19571672..19579331

Molecular Weight (calculated)

46530.3 Da

IEP (calculated)

7.237

GRAVY (calculated)

-0.326

Length

425 amino acids

Sequence
(BLAST)

001: MGNSHAKKRD TQFSRNVVKG RVPSPKDKTL SSLQSPSSPS QSPSPSLEPP REPPPPVMFF NTGSGKLSAK EKYALIPDNF TTLEQVTTAL RKEGLESSNL
101: VLGIDFTKSN EWTGSVSFNN KSLHAIGSTA NPYEKAISII GKTLAPFDDD NLIPCFGFGD ATTHDQEVFS FHSDHSPCHG FEEVLACYQK VVPNLRLSGP
201: TSYAPVIEAA IDIVEKSHGQ FHVLVIVADG QVTTSAASEH GELSPQEART IKAIVDASSY PLSIILVGVG DGPWEDMKKF DDKIPARDFD NFQFVNFTDI
301: MTKKSSPSEK ETAFALAALM EIPFQYKAAI ELELLGRATG RSNKIVPRPP PAPYSRLVPP ARVLSNMPTF MDDERNQMAC AICLTNKKDL AFGCGHMTCR
401: DCGSRLTNCP ICRQRITNRL RVFSS

Best Arabidopsis Sequence Match ( AT1G79380.1 )
(BLAST)

001: MTMGNFLKRF GSGKSRSSRN MTLGTTSSQS HEPSPSDPSL SLADNTNATK KKYALIPDRF SSLDQVSKAL REAGLESSNL ILGVDFTKSN EWTGKTSFDG
101: KCLHALGETS NPYEKAIFVI GQTLAPFDED NLIPCFGFGD STTHDEEVFG FHSDNSPCHG FEEVLACYKR IAPNLRLSGP TSYGPLIDAA VDIVEKNNGQ
201: FHVLVIVADG QVTRGTDMAE GELSQQEKTT IDAIVNASSY ALSIVLVGVG DGPWEDMRKF DDKIPKREFD NFQFVNFTEI MTRNSPESAK ETAFALAALM
301: EIPFQYQAAI ELRLLGKQTG LAKTIVPRPP PIPYTPPTNA ELPSTASPAS PEQTQSCPIC LTNRKDVAFS CGHMTCGDCG SKISNCPICR VRITNRLKLY
401: T

Arabidopsis Description

RGLG4E3 ubiquitin-protein ligase RGLG4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAL0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.