Factsheet for GSMUA_Achr7P03440_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50776	Canola	cytosol	14.38	60.81
CDX99619	Canola	cytosol	12.78	58.82
KRH43661	Soybean	cytosol	60.38	56.25
GSMUA_AchrUn_...	Banana	mitochondrion	73.8	55.53
Os08t0135400-01	Rice	plasma membrane	68.05	53.12
GSMUA_Achr7P20180_001	Banana	cytosol, nucleus, plastid	30.35	53.07
Zm00001d035211_P001	Maize	mitochondrion	67.73	52.48
TraesCS7D01G305600.1	Wheat	mitochondrion	68.05	52.46
TraesCS7A01G308900.1	Wheat	mitochondrion	67.09	52.37
EES13310	Sorghum	mitochondrion	67.73	51.96
VIT_19s0085g01000.t01	Wine grape	extracellular	62.3	50.65
TraesCS7B01G208900.1	Wheat	mitochondrion	66.77	49.76
CDX67997	Canola	cytosol	59.11	48.94
CDX79314	Canola	cytosol, plastid	58.79	48.55
GSMUA_Achr2P05470_001	Banana	nucleus	56.87	47.59
GSMUA_Achr5P25940_001	Banana	cytosol	32.59	47.0
KRH13149	Soybean	cytosol, plastid	62.3	46.76
CDX88533	Canola	plastid	59.74	46.4
AT1G79380.1	Thale cress	mitochondrion	59.42	46.38
CDX87387	Canola	plastid	59.11	46.02
Solyc05g053870.2.1	Tomato	plastid	66.13	45.9
KRH44829	Soybean	nucleus, plastid	62.3	45.88
Bra035112.1-P	Field mustard	plastid	58.79	45.77
GSMUA_Achr9P12830_001	Banana	cytosol, mitochondrion, nucleus, plastid	58.79	44.99
GSMUA_Achr10P...	Banana	nucleus	54.63	44.76
PGSC0003DMT400040712	Potato	nucleus, plastid	66.45	42.98
GSMUA_Achr8P01300_001	Banana	nucleus	57.19	41.24
GSMUA_Achr6P06710_001	Banana	nucleus	59.74	40.65
GSMUA_Achr4P09310_001	Banana	endoplasmic reticulum, golgi	47.28	40.11
GSMUA_Achr9P29460_001	Banana	nucleus	59.74	39.96
GSMUA_Achr5P25930_001	Banana	extracellular	29.39	38.82
GSMUA_AchrUn_...	Banana	cytosol	14.06	23.66
GSMUA_AchrUn_...	Banana	cytosol, golgi, plastid	24.6	17.58
GSMUA_Achr5P08050_001	Banana	cytosol	26.52	13.97

Protein Annotations

EnsemblPlants:GSMUA_Achr7P03440_001	EnsemblPlants:GSMUA_Achr7T03440_001	EnsemblPlantsGene:GSMUA_Achr7G03440_001	Gene3D:3.40.50.410	InterPro:Copine	InterPro:IPR002035
InterPro:IPR036465	InterPro:VWF_A	InterPro:vWFA_dom_sf	PANTHER:PTHR10857	PANTHER:PTHR10857:SF47	PFAM:PF07002
SEG:seg	SMART:SM00327	SUPFAM:SSF53300	UniParc:UPI0002955F1A	UniProt:M0TED4	MapMan:19.2.2.1.5.3.2
MapMan:19.2.2.1.6.2	:	:	:	:	:

Description

E3 ubiquitin-protein ligase RGLG2 [Source:GMGC_GENE;Acc:GSMUA_Achr7G03440_001]

Coordinates

chr7:-:2744067..2745724

Molecular Weight (calculated)

34623.8 Da

IEP (calculated)

4.889

GRAVY (calculated)

-0.344

Length

313 amino acids

Sequence
(BLAST)

001: MGNVVARFLG CRPSFLDEEE QPTTKDEASK RSRRKQKYAY IPDNYTSIEQ VTDALRDAGL ESSNLILGID FTGSNEWTGK RSFHDLSLHN ISNHRLNPYQ
101: QAISIIGKVL ASFDEDDLIP CFGFGDSTTK DQGVFSFRSD HSPCHGFDEV LRCYREIVPH LKLSGPTSFA PIVETAVDIA ESSGGQYHVL VIIADGQVSR
201: DPNKEPETIE SIVRASAYPL SIVLVGVGDG PWDDMRKFDD RIPARDFDNF QFVNFTDIMG SNATAAEKEA AFALAALMEI PIQYKATVEL GIVGRETGKP
301: KRRVPLPPPL PPS

Best Arabidopsis Sequence Match ( AT1G67800.1 )
(BLAST)

001: MGGSSSKESP RGGGSGRRYE RSVSGSSSYS SAWDQSSYYQ TPNHPSASPV SSYNSGRQTP KNLERKYSRI ADNYRSIDEV TAALSHAGLE SSNLIVGIDV
101: TKSNEWTGAR SFGRKSLHFI GTTPNPYQQA ISIIGKTLSV FDEDNLIPCY GFGDATTHDQ DVFSFNPNDT YCNGFEEVLM CYREIVPQLR LSGPTSFAPI
201: IERAMTIVEE SGGQYHVLLI IADGQVTRSV DTDNGGFSPQ EQQTIDAIVR ASEYPLSIVL VGVGDGPWDT MRQFDDNIPA RAFDNFQFVN FTDIMSKNID
301: PARKEAEFAL SALMEIPSQY KATLELGLLG QRTGHCPDRI ALPPPTYATQ SMRNSPRTSR STSFQNKPYD NGVSSTPPST THNESQQQFC PVCLVSAKNM
401: AFNCGHQTCA GCGEDLHVCP ICRSSISVRI KLY

Arabidopsis Description

Copine (Calcium-dependent phospholipid-binding protein) family [Source:UniProtKB/TrEMBL;Acc:F4HTR6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.