Factsheet for GSMUA_AchrUn_randomP22410_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P03440_001	Banana	cytosol	55.53	73.8
Zm00001d035211_P001	Maize	mitochondrion	71.15	73.27
KRH43661	Soybean	cytosol	59.13	73.21
EES13310	Sorghum	mitochondrion	70.91	72.3
TraesCS7A01G308900.1	Wheat	mitochondrion	68.51	71.07
Os08t0135400-01	Rice	plasma membrane	68.51	71.07
TraesCS7D01G305600.1	Wheat	mitochondrion	69.23	70.94
VIT_19s0085g01000.t01	Wine grape	extracellular	61.54	66.49
TraesCS7B01G208900.1	Wheat	mitochondrion	65.38	64.76
CDX67997	Canola	cytosol	57.21	62.96
CDX79314	Canola	cytosol, plastid	56.97	62.53
CDX88533	Canola	plastid	60.1	62.03
CDX87387	Canola	plastid	59.38	61.44
Bra035112.1-P	Field mustard	plastid	58.89	60.95
AT1G79380.1	Thale cress	mitochondrion	58.65	60.85
KRH13149	Soybean	cytosol, plastid	60.34	60.19
KRH44829	Soybean	nucleus, plastid	60.34	59.06
GSMUA_Achr2P05470_001	Banana	nucleus	52.88	58.82
Solyc05g053870.2.1	Tomato	plastid	63.22	58.31
GSMUA_Achr10P...	Banana	nucleus	52.88	57.59
CDX99619	Canola	cytosol	9.38	57.35
CDY50776	Canola	cytosol	10.1	56.76
GSMUA_Achr7P20180_001	Banana	cytosol, nucleus, plastid	23.8	55.31
GSMUA_Achr5P25930_001	Banana	extracellular	31.01	54.43
PGSC0003DMT400040712	Potato	nucleus, plastid	63.22	54.34
GSMUA_Achr9P12830_001	Banana	cytosol, mitochondrion, nucleus, plastid	52.4	53.3
GSMUA_Achr8P01300_001	Banana	nucleus	55.05	52.77
GSMUA_Achr9P29460_001	Banana	nucleus	58.17	51.71
GSMUA_Achr4P09310_001	Banana	endoplasmic reticulum, golgi	45.43	51.22
GSMUA_Achr6P06710_001	Banana	nucleus	55.05	49.78
GSMUA_Achr5P25940_001	Banana	cytosol	25.0	47.93
GSMUA_AchrUn_...	Banana	cytosol	11.3	25.27
GSMUA_AchrUn_...	Banana	cytosol, golgi, plastid	18.75	17.81
GSMUA_Achr5P08050_001	Banana	cytosol	20.91	14.65

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	InterPro:Copine	EnsemblPlantsGene:GSMUA_AchrUn_randomG22410_001	EnsemblPlants:GSMUA_AchrUn_randomP22410_001
EnsemblPlants:GSMUA_AchrUn_randomT22410_001	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	UniProt:M0UBE9
PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF47	SMART:SM00327
SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI00029565AF	InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	InterPro:vWFA_dom_sf	:	:	:	:

Description

E3 ubiquitin-protein ligase RGLG2 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG22410_001]

Coordinates

chrchrUn_random:-:109795640..109797749

Molecular Weight (calculated)

46071.9 Da

IEP (calculated)

8.874

GRAVY (calculated)

-0.397

Length

416 amino acids

Sequence
(BLAST)

001: MGNVLTRARV ILRRRSPVQR QSQPSMRRSS RDPSERQGTT TRPAASGPST DHRSLDRRRS QLIQKYAFIP DNYTSVDQVT AALREAGLES SNLILGIDFT
101: KSNEWTGKLS FDGQSLHKIG GRSNPYEQAI TIIGKVLAPF DEDNLIPCFG FGDHTTHDRE VFSFHPDQSP CHGFNEVLAC YRKIVPHLRL AGPTSFAPIV
201: EAAVDIVERS RGQYHVLVII ADGQVTRNVD INDGDLSPQE KKTIDSIVMA SAYPLSIVLV GVGDGPWDDM KKFDDRIPAR DFDNFQFVNF TAIMGKNANA
301: AEKEAAFALA ALMEVPIQYK ATLELGILGR VTGKAKRVVP RPPPLPVAQR QSSSRPARSS SERNSDDQNQ ICPICLTNKK DLAFGCGHMC CRECGQNLSR
401: CPICRATITS RLRLYS

Best Arabidopsis Sequence Match ( AT1G79380.1 )
(BLAST)

001: MTMGNFLKRF GSGKSRSSRN MTLGTTSSQS HEPSPSDPSL SLADNTNATK KKYALIPDRF SSLDQVSKAL REAGLESSNL ILGVDFTKSN EWTGKTSFDG
101: KCLHALGETS NPYEKAIFVI GQTLAPFDED NLIPCFGFGD STTHDEEVFG FHSDNSPCHG FEEVLACYKR IAPNLRLSGP TSYGPLIDAA VDIVEKNNGQ
201: FHVLVIVADG QVTRGTDMAE GELSQQEKTT IDAIVNASSY ALSIVLVGVG DGPWEDMRKF DDKIPKREFD NFQFVNFTEI MTRNSPESAK ETAFALAALM
301: EIPFQYQAAI ELRLLGKQTG LAKTIVPRPP PIPYTPPTNA ELPSTASPAS PEQTQSCPIC LTNRKDVAFS CGHMTCGDCG SKISNCPICR VRITNRLKLY
401: T

Arabidopsis Description

RGLG4E3 ubiquitin-protein ligase RGLG4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAL0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.