Factsheet for GSMUA_Achr9P12830_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P05470_001	Banana	nucleus	67.97	74.33
GSMUA_Achr7P20180_001	Banana	cytosol, nucleus, plastid	28.12	64.25
GSMUA_Achr4P09310_001	Banana	endoplasmic reticulum, golgi	55.5	61.52
VIT_00s0780g00040.t01	Wine grape	cytosol, mitochondrion, nucleus	64.79	60.64
GSMUA_Achr7P03440_001	Banana	cytosol	44.99	58.79
GSMUA_Achr8P01300_001	Banana	nucleus	58.92	55.53
GSMUA_Achr10P...	Banana	nucleus	51.34	54.97
GSMUA_Achr6P06710_001	Banana	nucleus	60.64	53.91
GSMUA_Achr9P29460_001	Banana	nucleus	61.37	53.63
GSMUA_AchrUn_...	Banana	mitochondrion	53.3	52.4
GSMUA_Achr5P25930_001	Banana	extracellular	28.85	49.79
GSMUA_Achr5P25940_001	Banana	cytosol	26.16	49.31
GSMUA_AchrUn_...	Banana	cytosol	10.27	22.58
GSMUA_AchrUn_...	Banana	cytosol, golgi, plastid	19.8	18.49
GSMUA_Achr5P08050_001	Banana	cytosol	22.25	15.32

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	InterPro:Copine	EnsemblPlantsGene:GSMUA_Achr9G12830_001	EnsemblPlants:GSMUA_Achr9P12830_001
EnsemblPlants:GSMUA_Achr9T12830_001	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	UniProt:M0TZU1
PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF28	SMART:SM00327
SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0002953550	InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	InterPro:vWFA_dom_sf	:	:	:	:

Description

E3 ubiquitin-protein ligase RGLG2 [Source:GMGC_GENE;Acc:GSMUA_Achr9G12830_001]

Coordinates

chr9:+:8315990..8320253

Molecular Weight (calculated)

45325.5 Da

IEP (calculated)

6.592

GRAVY (calculated)

-0.412

Length

409 amino acids

Sequence
(BLAST)

001: MGGRLSKSRG SNHYPQYVST TSRSTSRYSS HPGAHDLPRA TGRLQKKYSK IGDDYDSVEQ VTEALSNAGL ESSNLIVGID FTKSNEWTGK VSFNRRSLHD
101: MDHFPNPYEK AISIIGRTLS AFDEDNLIPC FGFGDATTHD QKVFSFFPDN RPCNGFEEAL QRYREIVPQL RLAGPTSFAP IIETAISIVD HSGGQYHVLL
201: IIADGQVTRS VDRDCGQLSS QERDTINAIV KASDYPLSIV LVGVGDGPWD MMQQFDDNIP SRAFDNFQFV NFTEIMSRNI TSSKMEAEFA LAALMEIPSQ
301: YKATLDLQLL GNRRGIEERF CLPPPVNGNG STAKRPESSI TYRSTGLKKS IPAETSESST EERKICGICG YLMKNLAFGC GHQTCYDCGK DLNVCPICTS
401: PIAKRIKLY

Best Arabidopsis Sequence Match ( AT5G14420.1 )
(BLAST)

001: MGTGNSKENW RQSSFRSTSA SSASPSSSSW ASQQSYPQYG AESYNYPPPP SYAQPPEYTQ PPPPLYSTQP YSAPSYSAPP SQSYGSDNKK RLERKYSKIS
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY

Arabidopsis Description

RGLG2E3 ubiquitin-protein ligase RGLG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY87]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.