Factsheet for GSMUA_Achr4P09310_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

nucleus 2
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P05470_001	Banana	nucleus	70.73	69.79
GSMUA_Achr9P12830_001	Banana	cytosol, mitochondrion, nucleus, plastid	61.52	55.5
KRH07102	Soybean	cytosol	20.6	54.29
CDY49067	Canola	extracellular	20.33	50.0
GSMUA_Achr5P25930_001	Banana	extracellular	31.44	48.95
GSMUA_Achr8P01300_001	Banana	nucleus	56.37	47.93
GSMUA_Achr9P29460_001	Banana	nucleus	60.16	47.44
GSMUA_Achr7P03440_001	Banana	cytosol	40.11	47.28
GSMUA_Achr10P...	Banana	nucleus	48.51	46.86
KRH07106	Soybean	cytosol, plastid	36.04	45.7
GSMUA_Achr6P06710_001	Banana	nucleus	56.64	45.43
GSMUA_AchrUn_...	Banana	mitochondrion	51.22	45.43
GSMUA_Achr7P20180_001	Banana	cytosol, nucleus, plastid	21.68	44.69
Bra012681.1-P	Field mustard	cytosol	12.47	41.07
Bra018339.1-P	Field mustard	cytosol	14.63	36.49
GSMUA_Achr5P25940_001	Banana	cytosol	20.33	34.56
CDY03984	Canola	cytosol	20.05	24.92
GSMUA_AchrUn_...	Banana	cytosol	8.4	16.67
GSMUA_AchrUn_...	Banana	cytosol, golgi, plastid	18.16	15.3
GSMUA_Achr5P08050_001	Banana	cytosol	18.7	11.62

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	InterPro:Copine	EnsemblPlantsGene:GSMUA_Achr4G09310_001	EnsemblPlants:GSMUA_Achr4P09310_001
EnsemblPlants:GSMUA_Achr4T09310_001	InterPro:IPR001841	InterPro:IPR013083	InterPro:IPR036465	UniProt:M0SME8	PFAM:PF07002
PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF28	SMART:SM00184	SUPFAM:SSF53300
SUPFAM:SSF57850	SignalP:SignalP-noTM	UniParc:UPI0002963151	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg
InterPro:vWFA_dom_sf	:	:	:	:	:

Description

E3 ubiquitin-protein ligase RGLG1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G09310_001]

Coordinates

chr4:-:6784461..6789807

Molecular Weight (calculated)

41432.9 Da

IEP (calculated)

5.646

GRAVY (calculated)

-0.130

Length

369 amino acids

Sequence
(BLAST)

001: MIMAILLQAM LQGSLQLLQI MCSLKQLLRR LQKQVLNHQI LSWELILQRA MNGQVKFLST AIAYMTLGIL QTNEQAISII GKTLSAFDED NLIPCFGFGD
101: ASTHDQEVFS FYPDNRPCNG FEEALERYRE LVPNLRLAGP TSFAPIIETA VGIVDNTHGQ YHVLLIIADG QVTRSVDTQY GQLSPQERDT LSAIVKASDY
201: PLSIVLVGVG DGPWDMMHEF DDNIPSRAYD NFQFVNFTEI MSRNFPASRK ETEFALAALM EIPSQYKATI DLQLLGQRRG VPDRVCLPPP TRNPYSRSSS
301: FEQGPGITRS YPPATSESSM EDKLICPICL WKSKDFAFGC GHQTCFDCGK DLQRCPICQS HITTKIRLY

Best Arabidopsis Sequence Match ( AT1G67800.1 )
(BLAST)

001: MGGSSSKESP RGGGSGRRYE RSVSGSSSYS SAWDQSSYYQ TPNHPSASPV SSYNSGRQTP KNLERKYSRI ADNYRSIDEV TAALSHAGLE SSNLIVGIDV
101: TKSNEWTGAR SFGRKSLHFI GTTPNPYQQA ISIIGKTLSV FDEDNLIPCY GFGDATTHDQ DVFSFNPNDT YCNGFEEVLM CYREIVPQLR LSGPTSFAPI
201: IERAMTIVEE SGGQYHVLLI IADGQVTRSV DTDNGGFSPQ EQQTIDAIVR ASEYPLSIVL VGVGDGPWDT MRQFDDNIPA RAFDNFQFVN FTDIMSKNID
301: PARKEAEFAL SALMEIPSQY KATLELGLLG QRTGHCPDRI ALPPPTYATQ SMRNSPRTSR STSFQNKPYD NGVSSTPPST THNESQQQFC PVCLVSAKNM
401: AFNCGHQTCA GCGEDLHVCP ICRSSISVRI KLY

Arabidopsis Description

Copine (Calcium-dependent phospholipid-binding protein) family [Source:UniProtKB/TrEMBL;Acc:F4HTR6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.