Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH07102 | Soybean | cytosol | 55.33 | 59.29 |
| CDY27585 | Canola | cytosol | 46.67 | 53.85 |
| CDY49066 | Canola | cytosol | 92.67 | 30.22 |
| CDY37509 | Canola | cytosol | 92.67 | 30.22 |
| CDX74310 | Canola | cytosol | 85.33 | 27.95 |
| CDX91935 | Canola | cytosol | 84.67 | 27.79 |
| CDX85597 | Canola | cytosol, plastid | 73.33 | 24.39 |
| CDY50776 | Canola | cytosol | 12.0 | 24.32 |
| CDX91062 | Canola | cytosol, plastid | 72.67 | 24.11 |
| CDY09854 | Canola | nucleus, plastid | 74.67 | 24.03 |
| CDX69581 | Canola | nucleus, plastid | 74.0 | 23.82 |
| CDX70564 | Canola | cytosol, plastid | 74.67 | 23.78 |
| CDX78576 | Canola | cytosol, plastid | 73.33 | 23.35 |
| CDX84957 | Canola | cytosol | 52.67 | 20.52 |
| GSMUA_Achr4P09310_001 | Banana | endoplasmic reticulum, golgi | 50.0 | 20.33 |
| CDY01855 | Canola | cytosol, plastid | 58.67 | 19.95 |
| CDY56212 | Canola | plastid | 57.33 | 19.5 |
| CDY39835 | Canola | cytosol | 44.67 | 18.26 |
| CDY31343 | Canola | cytosol | 44.67 | 18.26 |
| CDX84471 | Canola | cytosol, mitochondrion | 44.0 | 18.18 |
| CDY43775 | Canola | cytosol, mitochondrion | 44.0 | 17.98 |
| CDX99619 | Canola | cytosol | 8.0 | 17.65 |
| CDX87387 | Canola | plastid | 46.67 | 17.41 |
| CDX88533 | Canola | plastid | 46.67 | 17.37 |
| Zm00001d046554_P003 | Maize | cytosol, plastid | 50.67 | 17.08 |
| KXG20338 | Sorghum | nucleus | 50.67 | 17.0 |
| Os06t0608800-02 | Rice | nucleus | 50.0 | 16.78 |
| TraesCS7B01G283200.1 | Wheat | cytosol | 50.0 | 16.45 |
| TraesCS7A01G381300.1 | Wheat | plastid | 50.0 | 16.41 |
| TraesCS7D01G377600.1 | Wheat | plastid | 50.0 | 16.41 |
| CDX67997 | Canola | cytosol | 41.33 | 16.4 |
| TraesCS7B01G283100.1 | Wheat | cytosol | 48.0 | 16.25 |
| CDX79314 | Canola | cytosol, plastid | 40.67 | 16.09 |
| TraesCS7D01G377500.1 | Wheat | plastid | 48.67 | 16.08 |
| VIT_00s0780g00040.t01 | Wine grape | cytosol, mitochondrion, nucleus | 46.67 | 16.02 |
| TraesCS7A01G381200.1 | Wheat | cytosol, plastid | 46.67 | 15.87 |
| Zm00001d036831_P006 | Maize | cytosol | 45.33 | 14.85 |
| CDY25816 | Canola | cytosol | 4.0 | 12.24 |
| CDY03984 | Canola | cytosol | 18.67 | 9.43 |
| CDX72278 | Canola | plastid | 14.0 | 5.66 |
| CDY52873 | Canola | plastid | 10.0 | 4.9 |
| CDX98983 | Canola | cytosol, plastid | 8.0 | 4.9 |
| CDX98984 | Canola | cytosol | 8.67 | 2.21 |
| CDX70026 | Canola | cytosol | 8.67 | 2.21 |
| CDX86951 | Canola | cytosol | 8.0 | 2.07 |
| CDY00235 | Canola | cytosol | 8.0 | 2.07 |
| CDY06335 | Canola | cytosol | 8.0 | 2.06 |
| CDY22660 | Canola | cytosol | 7.33 | 1.89 |
| CDX81044 | Canola | cytosol | 7.33 | 1.87 |
| CDX78287 | Canola | cytosol | 7.33 | 1.87 |
| CDY27584 | Canola | cytosol | 1.33 | 0.86 |
| KRH07106 | Soybean | cytosol, plastid | 1.33 | 0.69 |
| CDX85680 | Canola | mitochondrion, plastid | 0.67 | 0.68 |
Protein Annotations
| EnsemblPlants:CDY49067 | EnsemblPlantsGene:GSBRNA2T00092288001 | Gene3D:3.30.40.10 | GO:A0A078IGH9 | InterPro:Copine | InterPro:IPR001841 |
| InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR10857 | PANTHER:PTHR10857:SF28 | PFAM:PF07002 |
| PFAM:PF13920 | PFscan:PS50089 | ProteinID:CDY49067 | ProteinID:CDY49067.1 | SUPFAM:SSF57850 | UniParc:UPI0004EE9C26 |
| UniProt:A0A078IGH9 | MapMan:35.1 | : | : | : | : |
Description
BnaC05g48950DBnaC05g48950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IGH9]
Coordinates
chrLK032808:+:116616..120064
Molecular Weight (calculated)
16669.4 Da
IEP (calculated)
7.906
GRAVY (calculated)
-0.225
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MYVKLYFMVC FVNFTEIMSK NKEQSRKETE FALSALMEIP PQYKATIELG LLGRRNGNIP ERIPLPPPVQ GGSTFFNPSK ASPTPSFEPS VPTYPMEGKD
101: VDDNQLCPIC LSNPKNMAFG CGHQTCCECG PGLTVCPICR APIQTRIKLY
101: VDDNQLCPIC LSNPKNMAFG CGHQTCCECG PGLTVCPICR APIQTRIKLY
001: MGGGNSKEES SSPSSSSWAS HQSYPQYGPD SYNYPPPPTY APAPSPAPAP APVPAPSPAS SYGPQYSQEG YASQPNNPPP PTYAPAPSPA SSYGHQYSQE
101: GYASAASQPN YPPPPSQSQV ADRKKFDRRY SKISDNYSSL LQVSEALGRA GLESSNLIVG IDFTKSNEWT GAKSFNRKSL HHLSNTPNPY EQAITIIGRT
201: LAAFDEDNLI PCYGFGDAST HDQDVFSFYP EGRFCNGFEE VLARYREIVP QLKLAGPTSF APIIEMAMTV VEQSSGQYHV LVIIADGQVT RSVDTEHGRL
301: SPQEQKTVDA IVKASTLPLS IVLVGVGDGP WDMMQEFDDN IPARAFDNFQ FVNFTEIMSK NKDQSRKETE FALSALMEIP PQYKATIELN LLGVRNGNIP
401: QRIPLPPPVQ SGSSFSSSRI PNFEPSVPPY PFESKQMSSA DDIQLCPICL SNPKNMAFGC GHQTCCECGP DLKVCPICRA PIQTRIKLY
101: GYASAASQPN YPPPPSQSQV ADRKKFDRRY SKISDNYSSL LQVSEALGRA GLESSNLIVG IDFTKSNEWT GAKSFNRKSL HHLSNTPNPY EQAITIIGRT
201: LAAFDEDNLI PCYGFGDAST HDQDVFSFYP EGRFCNGFEE VLARYREIVP QLKLAGPTSF APIIEMAMTV VEQSSGQYHV LVIIADGQVT RSVDTEHGRL
301: SPQEQKTVDA IVKASTLPLS IVLVGVGDGP WDMMQEFDDN IPARAFDNFQ FVNFTEIMSK NKDQSRKETE FALSALMEIP PQYKATIELN LLGVRNGNIP
401: QRIPLPPPVQ SGSSFSSSRI PNFEPSVPPY PFESKQMSSA DDIQLCPICL SNPKNMAFGC GHQTCCECGP DLKVCPICRA PIQTRIKLY
Arabidopsis Description
RGLG1E3 ubiquitin-protein ligase RGLG1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS90]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.