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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX74310 Canola cytosol 97.59 97.38
CDY37509 Canola cytosol 92.12 91.52
CDY49066 Canola cytosol 92.12 91.52
CDY49067 Canola extracellular 27.79 84.67
AT3G01650.2 Thale cress cytosol 84.68 79.14
CDX85597 Canola cytosol, plastid 75.27 76.27
CDY09854 Canola nucleus, plastid 77.24 75.75
CDX70564 Canola cytosol, plastid 77.68 75.37
CDX69581 Canola nucleus, plastid 76.59 75.11
CDX78576 Canola cytosol, plastid 77.24 74.95
CDX91062 Canola cytosol, plastid 73.96 74.78
KRG94356 Soybean nucleus 63.68 67.99
CDY27584 Canola cytosol 33.7 66.38
VIT_14s0066g00290.t01 Wine grape mitochondrion 66.3 65.73
CDX84957 Canola cytosol 54.05 64.16
Zm00001d048784_P001 Maize cytosol 42.89 63.64
GSMUA_Achr8P01300_001 Banana nucleus 59.74 62.9
TraesCS5B01G111900.1 Wheat cytosol 32.82 62.24
GSMUA_Achr9P29460_001 Banana nucleus 63.46 61.97
CDY01855 Canola cytosol, plastid 59.74 61.9
KRH58251 Soybean nucleus 66.3 61.71
KRG93947 Soybean nucleus 66.74 61.49
CDY56212 Canola plastid 59.3 61.45
EES04073 Sorghum nucleus 61.71 61.44
Os01t0908700-01 Rice plasma membrane, plastid 59.96 61.44
GSMUA_Achr6P06710_001 Banana nucleus 61.71 61.3
CDX84471 Canola cytosol, mitochondrion 48.58 61.16
Solyc02g093520.2.1 Tomato nucleus 65.43 60.77
CDY43775 Canola cytosol, mitochondrion 48.36 60.22
TraesCS3B01G449200.1 Wheat cytosol 61.27 59.96
TraesCS3D01G408900.1 Wheat cytosol 61.05 59.87
Zm00001d042437_P005 Maize cytosol 61.71 59.75
CDY39835 Canola cytosol 47.92 59.67
CDY31343 Canola cytosol 47.92 59.67
PGSC0003DMT400032842 Potato mitochondrion 62.14 58.44
TraesCS3A01G414400.2 Wheat cytosol 53.83 56.42
Zm00001d012101_P002 Maize mitochondrion 61.71 55.51
CDX79314 Canola cytosol, plastid 45.3 54.62
CDX67997 Canola cytosol 45.08 54.5
CDX87387 Canola plastid 47.26 53.73
CDX88533 Canola plastid 47.05 53.35
CDY50776 Canola cytosol 8.53 52.7
Zm00001d041073_P001 Maize endoplasmic reticulum, golgi, vacuole 61.05 51.57
CDY27585 Canola cytosol 14.66 51.54
CDX99619 Canola cytosol 7.66 51.47
Os12t0288400-01 Rice endoplasmic reticulum, extracellular, vacuole 61.05 51.1
TraesCS5D01G122000.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 59.52 50.65
KRG95016 Soybean nucleus, peroxisome, plasma membrane 39.82 50.28
HORVU5Hr1G039100.3 Barley endoplasmic reticulum, extracellular, golgi 58.86 49.91
TraesCS5A01G103800.2 Wheat endoplasmic reticulum, extracellular, golgi 58.86 48.12
HORVU3Hr1G092250.6 Barley plastid 57.33 47.21
OQU79014 Sorghum plastid 54.27 46.88
CDX85680 Canola mitochondrion, plastid 10.5 32.65
CDY52873 Canola plastid 20.35 30.39
CDX72278 Canola plastid 22.76 28.03
CDX98983 Canola cytosol, plastid 14.44 26.94
CDY03984 Canola cytosol 14.66 22.56
CDY00235 Canola cytosol 21.23 16.72
CDX70026 Canola cytosol 21.44 16.64
CDX98984 Canola cytosol 21.23 16.52
CDY06335 Canola cytosol 20.79 16.3
CDX86951 Canola cytosol 20.57 16.21
CDX78287 Canola cytosol 20.79 16.18
CDY22660 Canola cytosol 20.57 16.18
CDX81044 Canola cytosol 20.57 16.01
CDY25816 Canola cytosol 1.31 12.24
Protein Annotations
MapMan:19.2.2.1.5.3.2MapMan:19.2.2.1.6.2Gene3D:3.30.40.10GO:A0A078DRK2EnsemblPlants:CDX91935ProteinID:CDX91935
ProteinID:CDX91935.1InterPro:CopineEnsemblPlantsGene:GSBRNA2T00153570001InterPro:IPR001841InterPro:IPR002035InterPro:IPR013083
InterPro:IPR036465PFAM:PF07002PFAM:PF13920PFscan:PS50089PANTHER:PTHR10857PANTHER:PTHR10857:SF28
SMART:SM00184SMART:SM00327SUPFAM:SSF53300SUPFAM:SSF57850UniParc:UPI0004EC506CInterPro:VWF_A
InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDSEG:segInterPro:vWFA_dom_sf::
Description
BnaC03g32370D
Coordinates
chrLK031870:-:891850..894857
Molecular Weight (calculated)
50305.0 Da
IEP (calculated)
5.280
GRAVY (calculated)
-0.503
Length
457 amino acids
Sequence
(BLAST)
001: MGGGNSKEDW RQESPSSSSS SWASHQSYPQ SGPGSYNYPP PPSYSPAPAP SPSPAPSFGA HLPQPPPYTQ EEAYAYPYPP PQPHPTDRKK FDRRYSKISD
101: NYASLDQVSE ALGRAGLESS NLIVGIDFTK SNEWTGAKSF NKKSLHHISN TPNPYEQAIT IIGRTLAAFD EDNLIPCFGF GDASTHDQDV FSFYPEGRSC
201: NGFEQVLARY REIVPHLKLA GPTSFAPIIE MAMTVVEQSS GQYHVLVIIA DGQVTRSVDT EHGQLSPQEQ RTVDAIVKAS ALPLSIILVG VGDGPWDMMQ
301: EFDDNIPSRA FDNFQFVNFT EIMSKNKEQS RKETEFALSA LMEIPPQYKA TIELGLLGRR NGSIQERIPL PPPVQQSGAT FFKPSPVQSF EPSVPTFPME
401: SKNMTTSVDD NQLCPICLSN PKNMAFGCGH QTCSECGPDL KVCPICRAPI QTRIKLY
Best Arabidopsis Sequence Match ( AT3G01650.1 )
(BLAST)
001: MGGGNSKEES SSPSSSSWAS HQSYPQYGPD SYNYPPPPTY APAPSPAPAP APVPAPSPAS SYGPQYSQEG YASQPNNPPP PTYAPAPSPA SSYGHQYSQE
101: GYASAASQPN YPPPPSQSQV ADRKKFDRRY SKISDNYSSL LQVSEALGRA GLESSNLIVG IDFTKSNEWT GAKSFNRKSL HHLSNTPNPY EQAITIIGRT
201: LAAFDEDNLI PCYGFGDAST HDQDVFSFYP EGRFCNGFEE VLARYREIVP QLKLAGPTSF APIIEMAMTV VEQSSGQYHV LVIIADGQVT RSVDTEHGRL
301: SPQEQKTVDA IVKASTLPLS IVLVGVGDGP WDMMQEFDDN IPARAFDNFQ FVNFTEIMSK NKDQSRKETE FALSALMEIP PQYKATIELN LLGVRNGNIP
401: QRIPLPPPVQ SGSSFSSSRI PNFEPSVPPY PFESKQMSSA DDIQLCPICL SNPKNMAFGC GHQTCCECGP DLKVCPICRA PIQTRIKLY
Arabidopsis Description
RGLG1E3 ubiquitin-protein ligase RGLG1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS90]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.