Factsheet for Solyc02g093520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032842	Potato	mitochondrion	91.26	92.39
KRG94356	Soybean	nucleus	61.38	70.56
VIT_14s0066g00290.t01	Wine grape	mitochondrion	66.06	70.5
KRH58251	Soybean	nucleus	67.89	68.02
AT5G14420.2	Thale cress	nucleus, plastid	64.63	67.95
Bra023465.1-P	Field mustard	cytosol, plastid	62.2	67.85
CDX85597	Canola	cytosol, plastid	62.2	67.85
CDX91062	Canola	cytosol, plastid	62.2	67.7
GSMUA_Achr9P29460_001	Banana	nucleus	64.02	67.31
GSMUA_Achr8P01300_001	Banana	nucleus	59.35	67.28
KRG93947	Soybean	nucleus	67.68	67.14
Solyc03g111870.2.1	Tomato	nucleus	59.55	67.05
CDY49066	Canola	cytosol	62.2	66.52
CDX70564	Canola	cytosol, plastid	63.62	66.45
EES04073	Sorghum	nucleus	61.99	66.45
Bra039105.1-P	Field mustard	nucleus	61.59	66.45
Os01t0908700-01	Rice	plasma membrane, plastid	60.16	66.37
Bra006253.1-P	Field mustard	nucleus, plastid	63.41	66.24
CDX69581	Canola	nucleus, plastid	62.6	66.09
CDY37509	Canola	cytosol	61.79	66.09
CDX78576	Canola	cytosol, plastid	63.21	66.03
Bra008758.1-P	Field mustard	nucleus	62.4	65.88
CDY09854	Canola	nucleus, plastid	62.4	65.88
CDX91935	Canola	cytosol	60.77	65.43
Bra000997.1-P	Field mustard	nucleus	60.57	65.07
CDX74310	Canola	cytosol	60.37	64.85
TraesCS3D01G408900.1	Wheat	cytosol	61.38	64.81
Zm00001d048784_P001	Maize	cytosol	40.45	64.61
TraesCS3B01G449200.1	Wheat	cytosol	61.18	64.45
Zm00001d042437_P005	Maize	cytosol	61.38	63.98
TraesCS5B01G111900.1	Wheat	cytosol	31.1	63.49
GSMUA_Achr6P06710_001	Banana	nucleus	58.74	62.83
AT3G01650.2	Thale cress	cytosol	61.38	61.76
TraesCS3A01G414400.2	Wheat	cytosol	53.66	60.55
Zm00001d012101_P002	Maize	mitochondrion	61.18	59.25
Solyc09g065870.2.1	Tomato	nucleus	48.17	56.43
KRG95016	Soybean	nucleus, peroxisome, plasma membrane	38.41	52.21
Solyc05g053870.2.1	Tomato	plastid	47.36	51.66
Os12t0288400-01	Rice	endoplasmic reticulum, extracellular, vacuole	57.32	51.65
TraesCS5D01G122000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	56.1	51.4
HORVU3Hr1G092250.6	Barley	plastid	57.93	51.35
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	56.3	51.2
HORVU5Hr1G039100.3	Barley	endoplasmic reticulum, extracellular, golgi	55.08	50.28
TraesCS5A01G103800.2	Wheat	endoplasmic reticulum, extracellular, golgi	55.69	49.02
OQU79014	Sorghum	plastid	50.61	47.07
AT1G24545.1	Thale cress	cytosol	16.67	45.05
Solyc10g045520.1.1	Tomato	cytosol	7.52	26.62
Solyc10g045500.1.1	Tomato	cytosol	6.1	23.44
Solyc06g068840.2.1	Tomato	cytosol	19.72	16.81
Solyc03g118200.2.1	Tomato	cytosol	19.72	16.72

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	InterPro:Copine	InterPro:IPR001841	InterPro:IPR002035
InterPro:IPR013083	InterPro:IPR036465	UniProt:K4BDE8	EMBL:KC757132	PFAM:PF07002	PFAM:PF13920
PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF28	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850
EnsemblPlantsGene:Solyc02g093520.2	EnsemblPlants:Solyc02g093520.2.1	UniParc:UPI00027686E5	InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	InterPro:vWFA_dom_sf	:	:	:	:

Description

RING-finger protein [Source:UniProtKB/TrEMBL;Acc:K4BDE8]

Coordinates

chr2:+:54362406..54366456

Molecular Weight (calculated)

54488.1 Da

IEP (calculated)

5.737

GRAVY (calculated)

-0.612

Length

492 amino acids

Sequence
(BLAST)

001: MGGKSSREDS WRQASSTRSS SWNQYDYPQT AYPQDSYSYS QQTAVPSYAP PPPSQQNYPP QHQHNYSSQP QQNYASHEHE SRTHTHAPRP RLDRRYSRIA
101: DNYNSLDEVT EALARAGLES SNLIVGIDFT KSNEWTGKRS FSNRSLHHIG QNLNPYEQAI SIIGKTLAAF DEDNLIPCFG FGDASTHDQD VFSFFPNERF
201: CNGFEEVLSR YREIVPQLKL AGPTSFAPVI EMAMTIVEQS GGQYHVLLII ADGQVTRSVD TGRGQLSPQE QKTVDAIVQA SKFPLSIILV GVGDGPWDMM
301: KEFDDNIPAR DFDNFQFVNF TDIMAKNVPQ SRKETEFALS ALMEIPSQYK ATMELNLLGG QSGKSVNRVA LPPPMYGASS VGGSKTSHAP SFQQPASSYY
401: GYGSPADAEP HFQPTSSSYY DSARPVDNAP SAPSSPYTAP SSTYDNQVCP ICLTNPKDMA FGCGHQTCCE CGRALENCPI CRSSIQTRIK LY

Best Arabidopsis Sequence Match ( AT5G14420.1 )
(BLAST)

001: MGTGNSKENW RQSSFRSTSA SSASPSSSSW ASQQSYPQYG AESYNYPPPP SYAQPPEYTQ PPPPLYSTQP YSAPSYSAPP SQSYGSDNKK RLERKYSKIS
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY

Arabidopsis Description

RGLG2E3 ubiquitin-protein ligase RGLG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY87]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.