Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 4
- plasma membrane 1
- extracellular 1
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d048784_P001 | Maize | cytosol | 36.26 | 21.43 |
| KRG94356 | Soybean | nucleus | 47.25 | 20.09 |
| AT1G67800.2 | Thale cress | plasma membrane | 48.9 | 19.65 |
| GSMUA_Achr8P01300_001 | Banana | nucleus | 45.6 | 19.12 |
| VIT_14s0066g00290.t01 | Wine grape | mitochondrion | 48.35 | 19.09 |
| AT5G63970.1 | Thale cress | cytosol | 37.91 | 18.8 |
| AT5G14420.2 | Thale cress | nucleus, plastid | 47.8 | 18.59 |
| GSMUA_Achr9P29460_001 | Banana | nucleus | 46.7 | 18.16 |
| Os01t0908700-01 | Rice | plasma membrane, plastid | 44.51 | 18.16 |
| KRH58251 | Soybean | nucleus | 48.9 | 18.13 |
| KRG93947 | Soybean | nucleus | 48.9 | 17.94 |
| EES04073 | Sorghum | nucleus | 43.96 | 17.43 |
| Zm00001d042437_P005 | Maize | cytosol | 44.51 | 17.16 |
| AT3G01650.2 | Thale cress | cytosol | 45.6 | 16.97 |
| TraesCS3D01G408900.1 | Wheat | cytosol | 43.41 | 16.95 |
| TraesCS3B01G449200.1 | Wheat | cytosol | 43.41 | 16.92 |
| Solyc02g093520.2.1 | Tomato | nucleus | 45.05 | 16.67 |
| GSMUA_Achr6P06710_001 | Banana | nucleus | 41.76 | 16.52 |
| TraesCS3A01G414400.2 | Wheat | cytosol | 39.01 | 16.28 |
| PGSC0003DMT400032842 | Potato | mitochondrion | 43.41 | 16.26 |
| AT1G79380.1 | Thale cress | mitochondrion | 35.71 | 16.21 |
| Zm00001d012101_P002 | Maize | mitochondrion | 43.96 | 15.75 |
| TraesCS5D01G122000.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 43.41 | 14.71 |
| Os12t0288400-01 | Rice | endoplasmic reticulum, extracellular, vacuole | 43.96 | 14.65 |
| HORVU5Hr1G039100.3 | Barley | endoplasmic reticulum, extracellular, golgi | 42.86 | 14.47 |
| TraesCS5A01G103800.2 | Wheat | endoplasmic reticulum, extracellular, golgi | 42.86 | 13.95 |
| Zm00001d041073_P001 | Maize | endoplasmic reticulum, golgi, vacuole | 41.21 | 13.86 |
| OQU79014 | Sorghum | plastid | 38.46 | 13.23 |
| HORVU3Hr1G092250.6 | Barley | plastid | 40.11 | 13.15 |
| KRG95016 | Soybean | nucleus, peroxisome, plasma membrane | 22.53 | 11.33 |
| TraesCS5B01G111900.1 | Wheat | cytosol | 14.84 | 11.2 |
| AT5G61900.3 | Thale cress | cytosol | 25.27 | 7.96 |
| AT5G07300.1 | Thale cress | cytosol | 24.18 | 7.51 |
| AT1G08860.1 | Thale cress | cytosol | 23.08 | 7.19 |
| AT5G61910.4 | Thale cress | cytosol | 25.27 | 3.42 |
Protein Annotations
| ArrayExpress:AT1G24545 | EnsemblPlants:AT1G24545.1 | EnsemblPlantsGene:AT1G24545 | EntrezGene:28717265 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:Copine | PANTHER:PTHR10857 | PANTHER:PTHR10857:SF28 | PFAM:PF07002 | ProteinID:ANM60887.1 |
| RefSeq:NP_001323137.1 | TMHMM:TMhelix | UniParc:UPI000848F4A1 | UniProt:A0A1P8AWA7 | MapMan:35.1 | : |
Description
Copine family protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8AWA7]
Coordinates
chr1:-:8701112..8702477
Molecular Weight (calculated)
20771.7 Da
IEP (calculated)
7.932
GRAVY (calculated)
-0.238
Length
182 amino acids
Sequence
(BLAST)
(BLAST)
001: MENSERGYIG VGETRDDLLR RRNFKFYGEE DRRKQSRRQL CLKLEGARSF NRQSLHYIGT SPNPYQQAIS VIGKTLYAFD EDNLIPCYGF GDGPTSFAPI
101: IERAMTIVEE SGGQYHSRGW SITFIPFFMY NVVVSLGTIS CPWTTFTEYL IKIAAATIFI CVYANFFPTH SLGPPLNTTY LN
101: IERAMTIVEE SGGQYHSRGW SITFIPFFMY NVVVSLGTIS CPWTTFTEYL IKIAAATIFI CVYANFFPTH SLGPPLNTTY LN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.