Factsheet for PGSC0003DMT400032842

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g093520.2.1	Tomato	nucleus	92.39	91.26
VIT_14s0066g00290.t01	Wine grape	mitochondrion	63.79	67.25
KRG94356	Soybean	nucleus	58.85	66.82
KRH58251	Soybean	nucleus	65.84	65.17
AT5G14420.2	Thale cress	nucleus, plastid	62.14	64.53
EES04073	Sorghum	nucleus	60.91	64.49
GSMUA_Achr9P29460_001	Banana	nucleus	61.93	64.32
KRG93947	Soybean	nucleus	65.64	64.31
GSMUA_Achr8P01300_001	Banana	nucleus	57.41	64.29
Bra023465.1-P	Field mustard	cytosol, plastid	59.47	64.08
CDX85597	Canola	cytosol, plastid	59.47	64.08
Zm00001d048784_P001	Maize	cytosol	40.53	63.96
CDX91062	Canola	cytosol, plastid	59.47	63.94
Os01t0908700-01	Rice	plasma membrane, plastid	58.64	63.9
CDX69581	Canola	nucleus, plastid	60.49	63.09
CDY49066	Canola	cytosol	59.67	63.04
Bra039105.1-P	Field mustard	nucleus	59.05	62.94
Bra008758.1-P	Field mustard	nucleus	60.29	62.88
CDX70564	Canola	cytosol, plastid	60.91	62.84
CDY09854	Canola	nucleus, plastid	60.08	62.66
Bra006253.1-P	Field mustard	nucleus, plastid	60.7	62.63
CDY37509	Canola	cytosol	59.26	62.61
CDX78576	Canola	cytosol, plastid	60.49	62.42
TraesCS3D01G408900.1	Wheat	cytosol	59.67	62.23
CDX91935	Canola	cytosol	58.44	62.14
TraesCS3B01G449200.1	Wheat	cytosol	59.47	61.88
TraesCS3A01G414400.2	Wheat	cytosol	55.35	61.7
Zm00001d042437_P005	Maize	cytosol	59.88	61.65
Bra000997.1-P	Field mustard	nucleus	58.02	61.57
CDX74310	Canola	cytosol	57.82	61.35
GSMUA_Achr6P06710_001	Banana	nucleus	55.97	59.13
TraesCS5B01G111900.1	Wheat	cytosol	29.22	58.92
AT3G01650.2	Thale cress	cytosol	59.05	58.69
Zm00001d012101_P002	Maize	mitochondrion	60.08	57.48
HORVU3Hr1G092250.6	Barley	plastid	59.05	51.71
Os12t0288400-01	Rice	endoplasmic reticulum, extracellular, vacuole	55.97	49.82
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	54.94	49.35
TraesCS5D01G122000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	54.53	49.35
KRG95016	Soybean	nucleus, peroxisome, plasma membrane	36.42	48.9
HORVU5Hr1G039100.3	Barley	endoplasmic reticulum, extracellular, golgi	53.7	48.42
OQU79014	Sorghum	plastid	51.44	47.26
TraesCS5A01G103800.2	Wheat	endoplasmic reticulum, extracellular, golgi	54.12	47.05
PGSC0003DMT400040712	Potato	nucleus, plastid	44.86	45.04
AT1G24545.1	Thale cress	cytosol	16.26	43.41
PGSC0003DMT400049766	Potato	extracellular	9.67	39.83
PGSC0003DMT400039186	Potato	cytosol	57.2	28.96

Protein Annotations

EnsemblPlants:PGSC0003DMT400032842	EnsemblPlantsGene:PGSC0003DMG400012613	EntrezGene:102585646	InterPro:Copine	InterPro:IPR002035	InterPro:IPR036465
InterPro:VWF_A	InterPro:vWFA_dom_sf	PANTHER:PTHR10857	PANTHER:PTHR10857:SF28	PFAM:PF07002	PGSC:PGSC0003DMG400012613
SEG:seg	SMART:SM00327	SUPFAM:SSF53300	UniParc:UPI0002951068	UniProt:M1AY62	MapMan:19.2.2.1.5.3.2
MapMan:19.2.2.1.6.2	:	:	:	:	:

Description

RING-finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012613]

Coordinates

chr2:+:47544619..47549376

Molecular Weight (calculated)

53553.2 Da

IEP (calculated)

4.961

GRAVY (calculated)

-0.530

Length

486 amino acids

Sequence
(BLAST)

001: MGGKSSREDS WRQASSTRSS SWNQYDYPQT AYPQDSYSYS QQAAVPSYAP PPPSQQNFPP PQPQHNYASH EHESLPHAHA PRPRLDRRYS RIADNYNSLD
101: EVTEALARAG LESSNLIVGI DFTKSNEWTG KRSFGNRSLH HIGQNLNPYE QAISIIGKTL AAFDEDNLIP CFGFGDASTH DQDVFNFFPD ERFCNGFEEV
201: LSRYREIVPQ LKLAGPTSFA PVIEMAMTIV EQSGGQYHVL LIIADGQVTR SVDTGRGQLS PQEQKTVDAI VQASKFPLSI ILVGVGDGPW DMMKEFDDNI
301: PARDFDNFQF VNFTEIMAKN VPQSRKETEF ALSALMEIPP QYKATMELNL LGGQSGKSPN RVALPPPMYG ASSVGGSKTS RAPSFQQPAS SYYGYGSPAD
401: AAPHFQPTSS SYYDSARPVD TAPSAPSSPY TAPSSTYDNQ VCPICLTNPK DMAFGCGHQV PFSPLIEQAR CFEEIRPCCD LTISCS

Best Arabidopsis Sequence Match ( AT5G14420.1 )
(BLAST)

001: MGTGNSKENW RQSSFRSTSA SSASPSSSSW ASQQSYPQYG AESYNYPPPP SYAQPPEYTQ PPPPLYSTQP YSAPSYSAPP SQSYGSDNKK RLERKYSKIS
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY

Arabidopsis Description

RGLG2E3 ubiquitin-protein ligase RGLG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY87]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.