Factsheet for PGSC0003DMT400039186

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 3
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g111870.2.1	Tomato	nucleus	43.44	95.42
KRH63659	Soybean	cytosol, mitochondrion, nucleus, plastid	32.4	72.83
KRH54288	Soybean	cytosol, mitochondrion, nucleus, plastid	32.29	72.43
VIT_17s0000g09640.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	32.5	72.06
Zm00001d048784_P001	Maize	cytosol	20.94	65.26
Os01t0908700-01	Rice	plasma membrane, plastid	28.85	62.11
EES04073	Sorghum	nucleus	29.48	61.66
TraesCS3B01G449200.1	Wheat	cytosol	29.58	60.81
TraesCS3D01G408900.1	Wheat	cytosol	29.48	60.73
GSMUA_Achr9P29460_001	Banana	nucleus	29.58	60.68
GSMUA_Achr8P01300_001	Banana	nucleus	27.08	59.91
Zm00001d042437_P005	Maize	cytosol	29.06	59.11
TraesCS3A01G414400.2	Wheat	cytosol	26.25	57.8
PGSC0003DMT400032842	Potato	mitochondrion	28.96	57.2
GSMUA_Achr6P06710_001	Banana	nucleus	27.08	56.52
TraesCS5B01G111900.1	Wheat	cytosol	13.96	55.6
Zm00001d012101_P002	Maize	mitochondrion	29.27	55.31
HORVU3Hr1G092250.6	Barley	plastid	28.23	48.83
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	27.5	48.8
Os12t0288400-01	Rice	endoplasmic reticulum, extracellular, vacuole	27.71	48.72
TraesCS5D01G122000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	26.98	48.23
HORVU5Hr1G039100.3	Barley	endoplasmic reticulum, extracellular, golgi	26.67	47.5
TraesCS5A01G103800.2	Wheat	endoplasmic reticulum, extracellular, golgi	26.77	45.98
OQU79014	Sorghum	plastid	24.79	44.99
PGSC0003DMT400040712	Potato	nucleus, plastid	22.6	44.83
PGSC0003DMT400049766	Potato	extracellular	5.21	42.37

Protein Annotations

EntrezGene:102595336	MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:2.130.10.80	Gene3D:2.60.40.10	ncoils:Coil
InterPro:Copine	InterPro:GO-like_E_set	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:Gal_Oxidase_central_sf	InterPro:Glyoxal_oxidase_N	InterPro:IPR002035
InterPro:IPR013783	InterPro:IPR036465	InterPro:IPR037293	InterPro:Ig-like_fold	InterPro:Ig_E-set	UniProt:M1B7W1
PFAM:PF07002	PFAM:PF07250	PFAM:PF09118	EnsemblPlantsGene:PGSC0003DMG400015152	PGSC:PGSC0003DMG400015152	EnsemblPlants:PGSC0003DMT400039186
PANTHER:PTHR32208	PANTHER:PTHR32208:SF25	SMART:SM00327	SUPFAM:SSF50965	SUPFAM:SSF53300	SUPFAM:SSF81296
UniParc:UPI00029638E2	InterPro:VWF_A	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

Copine [Source:PGSC_GENE;Acc:PGSC0003DMG400015152]

Coordinates

chr3:-:51508762..51515301

Molecular Weight (calculated)

105393.0 Da

IEP (calculated)

8.985

GRAVY (calculated)

-0.400

Length

960 amino acids

Sequence
(BLAST)

001: MGGKSSKRST TGRYASYGSS SNSGYPGYAQ SPYTQPTYNC PPPPSYQTYG GPPPESRKRL ERKFSKIDDD YNSLEQVTDA LARAGLESSN LIVGIDFTKS
101: NEWTGTRSFH RKSLHHIGDG QNPYEQAISI IGRTLSKFDE DNLIPCYGFG DASTHDQEVF SFYPDEKFCN GFEEVLGRYR ELVPQLRLAG PTSFAPVIEM
201: AITIVEQSGG QYHVLLIIAD GQVTRSIDTV NGQLSPQEKR TVEAIVKASQ YPLSIVLVGV GDGPWDMMRE FDDNIPARAF DNFQANIMSK NMDLSRKEAE
301: FALSALMEIP SQYKATLELN ILGARRGNEI DRIPLHPPQY GAASFGTSKT SQNSSYRPSA PSSSGHNSAF GSGHNSAVGS SHPASSADNQ LCPICITNPK
401: DMAFGCGHQT CCECGQDLQA KAVLHHSAER KGTWKLLLNN TGVVGVQMVL THWNTVILLD RSGSGRSGYQ LRHRLNGTRC KGTRGDLSDP TCYVHSVEYS
501: ISNNTIRRLN IMSDTFSSSG SILSDGRIIE SGGFGDASTR IHYFGPCKSG DSCDWSLGKK HLSAKRWYAS SQILPDDRII VVGGRGSFTY EFIPKMSTNG
601: NVFHLSFLQQ TNDGNEDGNN LYPIVHLSVD GKLFIFANRD SILFNYKQNR VVKKFPRIPG IGSRSYPSTG SSVILPLDQK DGFRKVEVMI CGGAASGANA
701: AARQGTFLTG LNSCGRMVIT GNNHKWKMEN MPGPRLMNDM VLLPTGHVLI INGAKRGCAG WRNAAGPALE PYLYNPKKTL GRRFTVLKST KIARMFHSSA
801: ILVPDGSVLV AGSNPNNQYT YRNASHPTEL RLQAFIPDYM GKEYNHQRPH NVSIDINGTE GVAYGNEFLV RFLLESKPSK YLSFSAYAPP FTTHSLSMNQ
901: RLLKLRSTRI ISDAKGWWNA TVEAPPSANV APSGFYLLSV VNEGIPSISE WIKFIQPAST

Best Arabidopsis Sequence Match ( AT5G14420.1 )
(BLAST)

001: MGTGNSKENW RQSSFRSTSA SSASPSSSSW ASQQSYPQYG AESYNYPPPP SYAQPPEYTQ PPPPLYSTQP YSAPSYSAPP SQSYGSDNKK RLERKYSKIS
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY

Arabidopsis Description

RGLG2E3 ubiquitin-protein ligase RGLG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY87]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.