Factsheet for Zm00001d012101_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04073	Sorghum	nucleus	84.25	93.25
Zm00001d042437_P005	Maize	cytosol	83.86	90.25
Os01t0908700-01	Rice	plasma membrane, plastid	75.98	86.55
TraesCS3B01G449200.1	Wheat	cytosol	76.97	83.73
TraesCS3D01G408900.1	Wheat	cytosol	75.98	82.83
TraesCS3A01G414400.2	Wheat	cytosol	69.29	80.73
Zm00001d048784_P001	Maize	cytosol	45.08	74.35
GSMUA_Achr8P01300_001	Banana	nucleus	60.63	70.97
GSMUA_Achr9P29460_001	Banana	nucleus	64.76	70.3
KRH63659	Soybean	cytosol, mitochondrion, nucleus, plastid	56.1	66.74
VIT_01s0137g00460.t01	Wine grape	nucleus	58.07	66.74
KRH54288	Soybean	cytosol, mitochondrion, nucleus, plastid	56.1	66.59
VIT_17s0000g09640.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	56.69	66.51
HORVU3Hr1G092250.6	Barley	plastid	72.05	65.95
KRG94356	Soybean	nucleus	55.31	65.65
CDY27584	Canola	cytosol	29.92	65.52
CDX84957	Canola	cytosol	49.41	65.19
Bra032793.1-P	Field mustard	nucleus	49.02	65.18
Solyc03g111870.2.1	Tomato	nucleus	55.31	64.3
KRH59243	Soybean	endoplasmic reticulum, golgi	57.87	63.91
KRH43098	Soybean	endoplasmic reticulum, golgi	57.87	63.91
Bra039105.1-P	Field mustard	nucleus	56.1	62.5
VIT_14s0066g00290.t01	Wine grape	mitochondrion	56.69	62.47
CDY49066	Canola	cytosol	56.5	62.39
CDX85597	Canola	cytosol, plastid	55.31	62.31
Bra023465.1-P	Field mustard	cytosol, plastid	55.31	62.31
Bra000997.1-P	Field mustard	nucleus	56.1	62.23
CDX74310	Canola	cytosol	56.1	62.23
CDY37509	Canola	cytosol	56.1	61.96
CDY01855	Canola	cytosol, plastid	53.74	61.9
CDX91062	Canola	cytosol, plastid	54.92	61.73
CDX91935	Canola	cytosol	55.51	61.71
Bra004260.1-P	Field mustard	plastid	53.35	61.45
CDX69581	Canola	nucleus, plastid	56.3	61.37
CDY09854	Canola	nucleus, plastid	56.3	61.37
CDY56212	Canola	plastid	53.15	61.22
Solyc02g093520.2.1	Tomato	nucleus	59.25	61.18
Bra008758.1-P	Field mustard	nucleus	56.1	61.16
Zm00001d046554_P003	Maize	cytosol, plastid	53.35	60.9
KRG97516	Soybean	golgi, plasma membrane	54.72	60.57
AT5G14420.2	Thale cress	nucleus, plastid	55.71	60.47
CDX78576	Canola	cytosol, plastid	55.71	60.08
PGSC0003DMT400032842	Potato	mitochondrion	57.48	60.08
KRH58251	Soybean	nucleus	58.07	60.08
CDX70564	Canola	cytosol, plastid	55.51	59.87
Bra006253.1-P	Field mustard	nucleus, plastid	55.31	59.66
KRH31355	Soybean	golgi, plasma membrane	54.13	59.4
KRG93947	Soybean	nucleus	57.87	59.27
AT1G67800.2	Thale cress	plasma membrane	52.56	58.94
AT3G01650.2	Thale cress	cytosol	56.1	58.28
Zm00001d036831_P006	Maize	cytosol	50.98	56.55
Zm00001d035211_P001	Maize	mitochondrion	44.49	55.94
Zm00001d006136_P001	Maize	cytosol	10.24	53.61
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	55.91	52.5
KRG95016	Soybean	nucleus, peroxisome, plasma membrane	36.42	51.1
Zm00001d011821_P007	Maize	cytosol	42.72	50.58
Zm00001d034150_P001	Maize	cytosol	16.73	50.3
CDY27585	Canola	cytosol	12.8	50.0
Zm00001d041244_P001	Maize	extracellular	10.04	47.66
Zm00001d024705_P001	Maize	cytosol	8.46	45.74
AT1G24545.1	Thale cress	cytosol	15.75	43.96
Zm00001d005369_P001	Maize	mitochondrion	10.43	43.44
PGSC0003DMT400039186	Potato	cytosol	55.31	29.27
Zm00001d037872_P001	Maize	plasma membrane	20.28	17.49
Zm00001d016615_P002	Maize	plasma membrane	16.54	15.44

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	UniProt:A0A1D6G6M1	ProteinID:AQK98843.1	InterPro:Copine
GO:GO:0003674	GO:GO:0003824	GO:GO:0016874	InterPro:IPR001841	InterPro:IPR013083	InterPro:IPR036465
PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF28	SUPFAM:SSF53300
SUPFAM:SSF57850	UniParc:UPI000842CD0A	EnsemblPlantsGene:Zm00001d012101	EnsemblPlants:Zm00001d012101_P002	EnsemblPlants:Zm00001d012101_T002	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:	:

Description

E3 ubiquitin-protein ligase RGLG1

Coordinates

chr8:+:168277736..168281863

Molecular Weight (calculated)

55452.1 Da

IEP (calculated)

6.706

GRAVY (calculated)

-0.428

Length

508 amino acids

Sequence
(BLAST)

001: MGQRQSHSKR DGSSHGRRSR SFQQQPSAQW GAGGGGYYQQ DPSTGYYGAP VPQQGGGYYQ QDPGTGYYGA PVPQQGGGYA APYRDKPAAA AAVAAPAPQA
101: AKPRQLDRRY SRIADEYHSV DQVTDALAQA GLESSNLIVG IDFTKSNEWT GKFSFHGRSL HHISNTPNPY EQAISIIGRT LSKFDEDNLI PCFGFGDAST
201: HDQDVFCFSP DEKPCNGFEE ALDRYRELVP HLRLAGKLLC LVHPFNWIVH MCLHQFLTGP TSFAPIIEMA MTIVEQSGGQ YHVLLIIADG QVTRSVDTAS
301: GQLSSQEQKT VDAIVKASEL PLSIVLVGVG DGPWDMMKEF DDNIPARAFD NFQFVNFSEI MSKNMAQSRK EAAFALSALM EIPPQYKATV ELGILGRRSF
401: KSPDRVPLPP PSGSHGAYSY YSSKGFSKPS TYPQSSSSSS PYPHYETPHT ATPAAPSATY DNQVCPICLV NPKDMAFGCG HQTCCDCGQI LESCPICRTP
501: ITTRIKLY

Best Arabidopsis Sequence Match ( AT5G14420.1 )
(BLAST)

001: MGTGNSKENW RQSSFRSTSA SSASPSSSSW ASQQSYPQYG AESYNYPPPP SYAQPPEYTQ PPPPLYSTQP YSAPSYSAPP SQSYGSDNKK RLERKYSKIS
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY

Arabidopsis Description

RGLG2E3 ubiquitin-protein ligase RGLG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY87]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.