Factsheet for Zm00001d046554_P003

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG20338	Sorghum	nucleus	94.61	94.18
Zm00001d036831_P006	Maize	cytosol	90.11	87.55
Os06t0608800-02	Rice	nucleus	87.42	87.02
TraesCS7B01G283200.1	Wheat	cytosol	84.49	82.46
TraesCS7A01G381300.1	Wheat	plastid	84.04	81.84
TraesCS7D01G377600.1	Wheat	plastid	83.82	81.62
GSMUA_Achr2P05470_001	Banana	nucleus	66.97	79.68
TraesCS7A01G381200.1	Wheat	cytosol, plastid	76.63	77.32
TraesCS7B01G283100.1	Wheat	cytosol	75.96	76.3
TraesCS7D01G377500.1	Wheat	plastid	77.75	76.21
Zm00001d048784_P001	Maize	cytosol	43.6	62.99
KRH07106	Soybean	cytosol, plastid	40.9	62.54
VIT_00s0780g00040.t01	Wine grape	cytosol, mitochondrion, nucleus	58.65	59.73
Zm00001d042437_P005	Maize	cytosol	60.9	57.42
Zm00001d006136_P001	Maize	cytosol	12.13	55.67
KRH07102	Soybean	cytosol	17.08	54.29
Zm00001d035211_P001	Maize	mitochondrion	49.21	54.21
Zm00001d012101_P002	Maize	mitochondrion	60.9	53.35
CDY49067	Canola	extracellular	17.08	50.67
Zm00001d011821_P007	Maize	cytosol	47.42	49.18
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	57.53	47.32
Zm00001d034150_P001	Maize	cytosol	17.75	46.75
Zm00001d041244_P001	Maize	extracellular	11.24	46.73
Zm00001d024705_P001	Maize	cytosol	9.66	45.74
Zm00001d005369_P001	Maize	mitochondrion	12.13	44.26
Bra012681.1-P	Field mustard	cytosol	10.34	41.07
Bra018339.1-P	Field mustard	cytosol	12.58	37.84
CDY03984	Canola	cytosol	16.85	25.25
Zm00001d037872_P001	Maize	plasma membrane	21.57	16.3
Zm00001d016615_P002	Maize	plasma membrane	17.98	14.71

Protein Annotations

EntrezGene:100281056	MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	ProteinID:AQL04503.1	ProteinID:AQL04507.1
ProteinID:AQL04508.1	ProteinID:AQL04509.1	ProteinID:AQL04510.1	ProteinID:AQL04511.1	ProteinID:AQL04513.1	UniProt:B6SRS7
InterPro:Copine	EMBL:EU955442	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465
PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF28	SMART:SM00184
SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI000182B796	InterPro:VWF_A	EnsemblPlantsGene:Zm00001d046554
EnsemblPlants:Zm00001d046554_P003	EnsemblPlants:Zm00001d046554_T003	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf

Description

Copine-1%3B Copine-1 isoform 1%3B Copine-1 isoform 2

Coordinates

chr9:-:95762282..95767578

Molecular Weight (calculated)

49549.9 Da

IEP (calculated)

5.486

GRAVY (calculated)

-0.504

Length

445 amino acids

Sequence
(BLAST)

001: MGQKDSKPSN GYGYSSDYGG TSSGYNLRNT GSTSSSYGAR YVPSSENNVQ PETHARLQRK YSRIGDDYRS LSQVTEALAQ AGLESSNLIV GIDFTKSNEW
101: TGKISFNRRC LHDIGNTPNP YEQAISIIGR TLSVFDEDNL IPCFGFGDAS THDQEVFSFY PENRPCNGFE EALDRYREIV PTLRLAGPTS FAPMIETAIG
201: IVDSTGGQYH VLLIIADGQV TRSVDTQSGQ LSPQERDTID AIVRASQFPL SIVLVGVGDG PWDMMHQFDD NIPARSFDNF QFVNFTEIMS KSIAADRKEA
301: EFALSALMEI PTQYKATLDL QLLGRRQRIT PRIALPPPTR TAYSRTTSFS QQSGVYSRSS SFDQQTSVYQ QRSESLKQQQ PAAPKGPDTY VSESALEDRI
401: LCPICMYKSK DLAFGCGHQT CYECGRDLER CPLCQQHITT RIRLY

Best Arabidopsis Sequence Match ( AT3G01650.1 )
(BLAST)

001: MGGGNSKEES SSPSSSSWAS HQSYPQYGPD SYNYPPPPTY APAPSPAPAP APVPAPSPAS SYGPQYSQEG YASQPNNPPP PTYAPAPSPA SSYGHQYSQE
101: GYASAASQPN YPPPPSQSQV ADRKKFDRRY SKISDNYSSL LQVSEALGRA GLESSNLIVG IDFTKSNEWT GAKSFNRKSL HHLSNTPNPY EQAITIIGRT
201: LAAFDEDNLI PCYGFGDAST HDQDVFSFYP EGRFCNGFEE VLARYREIVP QLKLAGPTSF APIIEMAMTV VEQSSGQYHV LVIIADGQVT RSVDTEHGRL
301: SPQEQKTVDA IVKASTLPLS IVLVGVGDGP WDMMQEFDDN IPARAFDNFQ FVNFTEIMSK NKDQSRKETE FALSALMEIP PQYKATIELN LLGVRNGNIP
401: QRIPLPPPVQ SGSSFSSSRI PNFEPSVPPY PFESKQMSSA DDIQLCPICL SNPKNMAFGC GHQTCCECGP DLKVCPICRA PIQTRIKLY

Arabidopsis Description

RGLG1E3 ubiquitin-protein ligase RGLG1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.