Factsheet for Zm00001d035211_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024705_P001	Maize	cytosol	22.52	96.81
EES13310	Sorghum	mitochondrion	92.82	91.91
TraesCS7A01G308900.1	Wheat	mitochondrion	81.68	82.29
TraesCS7D01G305600.1	Wheat	mitochondrion	82.43	82.02
Os08t0135400-01	Rice	plasma membrane	81.19	81.8
TraesCS7B01G208900.1	Wheat	mitochondrion	77.72	74.76
KRH43661	Soybean	cytosol	60.4	72.62
GSMUA_AchrUn_...	Banana	mitochondrion	73.27	71.15
GSMUA_Achr7P03440_001	Banana	cytosol	52.48	67.73
VIT_19s0085g01000.t01	Wine grape	extracellular	61.14	64.16
CDX67997	Canola	cytosol	57.18	61.11
CDX79314	Canola	cytosol, plastid	56.93	60.69
CDX87387	Canola	plastid	59.41	59.7
CDX88533	Canola	plastid	59.41	59.55
CDY50776	Canola	cytosol	10.89	59.46
Bra035112.1-P	Field mustard	plastid	58.91	59.2
KRH13149	Soybean	cytosol, plastid	60.89	58.99
AT1G79380.1	Thale cress	mitochondrion	57.18	57.61
CDX99619	Canola	cytosol	9.65	57.35
KRH44829	Soybean	nucleus, plastid	59.9	56.94
Solyc05g053870.2.1	Tomato	plastid	61.63	55.21
Zm00001d048784_P001	Maize	cytosol	40.59	53.25
PGSC0003DMT400040712	Potato	nucleus, plastid	61.39	51.24
Zm00001d006136_P001	Maize	cytosol	12.13	50.52
Zm00001d046554_P003	Maize	cytosol, plastid	54.21	49.21
Zm00001d011821_P007	Maize	cytosol	51.98	48.95
Zm00001d042437_P005	Maize	cytosol	55.2	47.25
Zm00001d036831_P006	Maize	cytosol	51.73	45.63
Zm00001d012101_P002	Maize	mitochondrion	55.94	44.49
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	56.93	42.51
Zm00001d041244_P001	Maize	extracellular	11.14	42.06
Zm00001d005369_P001	Maize	mitochondrion	12.62	41.8
Zm00001d034150_P001	Maize	cytosol	16.83	40.24
Zm00001d037872_P001	Maize	plasma membrane	21.04	14.43
Zm00001d016615_P002	Maize	plasma membrane	15.84	11.76

Protein Annotations

EntrezGene:100383284	MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	UniProt:A0A1D6LF18	ProteinID:AQK78538.1
InterPro:Copine	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0006950	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605	GO:GO:0009607	GO:GO:0009611
GO:GO:0009719	GO:GO:0009867	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0042742
InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	PFAM:PF07002	PFAM:PF13920
PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF47	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850
UniParc:UPI0004DEAE31	InterPro:VWF_A	EnsemblPlantsGene:Zm00001d035211	EnsemblPlants:Zm00001d035211_P001	EnsemblPlants:Zm00001d035211_T001	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:	:

Description

Ca(2)-dependent phospholipid-binding protein (Copine) family

Coordinates

chr6:-:10030184..10032712

Molecular Weight (calculated)

43681.9 Da

IEP (calculated)

8.059

GRAVY (calculated)

-0.282

Length

404 amino acids

Sequence
(BLAST)

001: MGGVLGALLH RRSGGRPPPA RATRRRALTR QPSAYDAGGG HRRAMLSKKY SYIPDTYTSL DEVAAALREQ GLESSNLILG IDFTKSNEWT GRQSFGGQSL
101: HRVGDTPNPY EQAISIIGKT LAPFDEDNLI PCFGFGDATT HDYNVFSFHP DNSPCHGFEE VLACYRKIVP HLKLSGPTSF APIVEAAVDI VDRSGGQYHV
201: LVVVADGQVT RSVDTGDGDL SPQEKRTVES IVTASSYPLS IVLVGVGDGP WDDMRRFDDK LPARDFDNFQ FVNFTAIMAR AATAQQKESA FALAALMEVP
301: IQYKATMELG ILGRSTGNAK RVAPAPPPLP HAQRQASSLR RGASNVGGAA AAPRDDQVCP ICLTNAKDLA FGCGHMCCRE CGESLTRCPI CRQPIRSKLR
401: LYSG

Best Arabidopsis Sequence Match ( AT1G79380.1 )
(BLAST)

001: MTMGNFLKRF GSGKSRSSRN MTLGTTSSQS HEPSPSDPSL SLADNTNATK KKYALIPDRF SSLDQVSKAL REAGLESSNL ILGVDFTKSN EWTGKTSFDG
101: KCLHALGETS NPYEKAIFVI GQTLAPFDED NLIPCFGFGD STTHDEEVFG FHSDNSPCHG FEEVLACYKR IAPNLRLSGP TSYGPLIDAA VDIVEKNNGQ
201: FHVLVIVADG QVTRGTDMAE GELSQQEKTT IDAIVNASSY ALSIVLVGVG DGPWEDMRKF DDKIPKREFD NFQFVNFTEI MTRNSPESAK ETAFALAALM
301: EIPFQYQAAI ELRLLGKQTG LAKTIVPRPP PIPYTPPTNA ELPSTASPAS PEQTQSCPIC LTNRKDVAFS CGHMTCGDCG SKISNCPICR VRITNRLKLY
401: T

Arabidopsis Description

RGLG4E3 ubiquitin-protein ligase RGLG4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAL0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.