CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67997	Canola	cytosol	96.57	96.83
CDX88533	Canola	plastid	88.92	83.62
CDX87387	Canola	plastid	88.65	83.58
CDX99619	Canola	cytosol	12.93	72.06
CDY50776	Canola	cytosol	13.98	71.62
KRH43661	Soybean	cytosol	62.01	69.94
KRH13149	Soybean	cytosol, plastid	68.6	62.35
VIT_19s0085g01000.t01	Wine grape	extracellular	63.06	62.08
KRH44829	Soybean	nucleus, plastid	68.6	61.18
TraesCS7A01G308900.1	Wheat	mitochondrion	63.32	59.85
Os08t0135400-01	Rice	plasma membrane	62.8	59.35
GSMUA_Achr7P03440_001	Banana	cytosol	48.55	58.79
TraesCS7D01G305600.1	Wheat	mitochondrion	62.8	58.62
CDX84471	Canola	cytosol, mitochondrion	55.15	57.58
CDY31343	Canola	cytosol	55.41	57.22
GSMUA_AchrUn_...	Banana	mitochondrion	62.53	56.97
Zm00001d035211_P001	Maize	mitochondrion	60.69	56.93
CDY43775	Canola	cytosol, mitochondrion	54.88	56.68
EES13310	Sorghum	mitochondrion	60.95	56.62
Solyc05g053870.2.1	Tomato	plastid	67.28	56.54
CDY39835	Canola	cytosol	54.62	56.4
CDY27584	Canola	cytosol	33.77	55.17
CDX84957	Canola	cytosol	55.94	55.06
TraesCS7B01G208900.1	Wheat	mitochondrion	59.89	54.05
PGSC0003DMT400040712	Potato	nucleus, plastid	67.81	53.1
CDX85597	Canola	cytosol, plastid	58.05	48.78
CDX91062	Canola	cytosol, plastid	57.52	48.23
CDY01855	Canola	cytosol, plastid	55.41	47.62
CDY56212	Canola	plastid	55.15	47.39
CDX69581	Canola	nucleus, plastid	57.52	46.78
CDY09854	Canola	nucleus, plastid	56.73	46.14
CDX78576	Canola	cytosol, plastid	56.73	45.65
CDX74310	Canola	cytosol	55.15	45.63
CDX70564	Canola	cytosol, plastid	56.46	45.44
CDX91935	Canola	cytosol	54.62	45.3
CDY37509	Canola	cytosol	54.88	45.22
CDY49066	Canola	cytosol	54.88	45.22
CDX85680	Canola	mitochondrion, plastid	16.36	42.18
CDY27585	Canola	cytosol	14.25	41.54
CDY49067	Canola	extracellular	16.09	40.67
CDY52873	Canola	plastid	30.61	37.91
CDX72278	Canola	plastid	32.98	33.69
CDY03984	Canola	cytosol	25.07	31.99
CDX98983	Canola	cytosol, plastid	15.04	23.27
CDY25816	Canola	cytosol	2.11	16.33
CDX98984	Canola	cytosol	20.84	13.46
CDX70026	Canola	cytosol	20.84	13.41
CDY00235	Canola	cytosol	20.32	13.28
CDX81044	Canola	cytosol	20.32	13.12
CDX78287	Canola	cytosol	20.32	13.12
CDX86951	Canola	cytosol	19.79	12.93
CDY06335	Canola	cytosol	19.79	12.86
CDY22660	Canola	cytosol	19.53	12.74

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	GO:A0A078CTD8	EnsemblPlants:CDX79314	ProteinID:CDX79314
ProteinID:CDX79314.1	InterPro:Copine	EnsemblPlantsGene:GSBRNA2T00131986001	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083
InterPro:IPR036465	PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF47
SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0004EE6436	InterPro:VWF_A
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

BnaC06g19890D

Coordinates

chrLK031817:+:1273249..1275360

Molecular Weight (calculated)

41378.9 Da

IEP (calculated)

5.284

GRAVY (calculated)

-0.289

Length

379 amino acids

Sequence
(BLAST)

001: MSTGMGSGKG KSRPSPSDPS ISVSDKINAT REKYALIPDR FSSLDQVSKA LREAGLESSN LILGIDFTKS NEWSGKTSFN GKSLHALGAT QNPYEKAIFV
101: IGQTLAPFDE DNLIPCFGFG DSTTHDEEVF SFHSDNSPCH GFEEVLSCYR RITPNLILSG PTSYGPLIDA AVDIVEKNNG QFHVLVIVAD GQVTRGVDKA
201: EGELSQQERT TIDAIVNASS YALSIVLIGV GDGPWEDMRK FDDKIPKREF DNFQFVNFTE IMKRDSSESA KEAAFALAAL MEIPFQYQAA TELSLLGKTT
301: GLAKKINPRP PPTPYTPTIR TELPSPASEE HTQSCPICLT SQKDVAFGCG HMTCRDCGSR IANCPICRVL ITSRLRLYT

Best Arabidopsis Sequence Match ( AT1G79380.1 )
(BLAST)

001: MTMGNFLKRF GSGKSRSSRN MTLGTTSSQS HEPSPSDPSL SLADNTNATK KKYALIPDRF SSLDQVSKAL REAGLESSNL ILGVDFTKSN EWTGKTSFDG
101: KCLHALGETS NPYEKAIFVI GQTLAPFDED NLIPCFGFGD STTHDEEVFG FHSDNSPCHG FEEVLACYKR IAPNLRLSGP TSYGPLIDAA VDIVEKNNGQ
201: FHVLVIVADG QVTRGTDMAE GELSQQEKTT IDAIVNASSY ALSIVLVGVG DGPWEDMRKF DDKIPKREFD NFQFVNFTEI MTRNSPESAK ETAFALAALM
301: EIPFQYQAAI ELRLLGKQTG LAKTIVPRPP PIPYTPPTNA ELPSTASPAS PEQTQSCPIC LTNRKDVAFS CGHMTCGDCG SKISNCPICR VRITNRLKLY
401: T

Arabidopsis Description

RGLG4E3 ubiquitin-protein ligase RGLG4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAL0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.