CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78576	Canola	cytosol, plastid	97.88	97.88
CDX69581	Canola	nucleus, plastid	91.72	92.7
CDX91062	Canola	cytosol, plastid	88.96	92.7
CDY09854	Canola	nucleus, plastid	91.51	92.49
CDX85597	Canola	cytosol, plastid	87.9	91.8
AT5G14420.2	Thale cress	nucleus, plastid	89.6	90.17
CDX91935	Canola	cytosol	75.37	77.68
CDX74310	Canola	cytosol	75.37	77.51
CDY49066	Canola	cytosol	74.95	76.74
CDY37509	Canola	cytosol	74.73	76.52
CDY49067	Canola	extracellular	23.78	74.67
VIT_14s0066g00290.t01	Wine grape	mitochondrion	67.73	69.2
KRG94356	Soybean	nucleus	62.42	68.69
CDY27584	Canola	cytosol	32.91	66.81
CDX84957	Canola	cytosol	54.35	66.49
CDY01855	Canola	cytosol, plastid	61.36	65.53
CDY56212	Canola	plastid	60.72	64.85
Zm00001d048784_P001	Maize	cytosol	42.25	64.61
TraesCS5B01G111900.1	Wheat	cytosol	32.91	64.32
Solyc02g093520.2.1	Tomato	nucleus	66.45	63.62
GSMUA_Achr9P29460_001	Banana	nucleus	62.42	62.82
Os01t0908700-01	Rice	plasma membrane, plastid	59.45	62.78
GSMUA_Achr8P01300_001	Banana	nucleus	57.75	62.67
KRH58251	Soybean	nucleus	64.97	62.32
TraesCS3B01G449200.1	Wheat	cytosol	61.78	62.31
KRG93947	Soybean	nucleus	65.61	62.3
TraesCS3D01G408900.1	Wheat	cytosol	61.57	62.23
EES04073	Sorghum	nucleus	60.51	62.09
GSMUA_Achr6P06710_001	Banana	nucleus	60.51	61.96
PGSC0003DMT400032842	Potato	mitochondrion	62.84	60.91
CDX84471	Canola	cytosol, mitochondrion	46.92	60.88
Zm00001d042437_P005	Maize	cytosol	60.93	60.81
CDY43775	Canola	cytosol, mitochondrion	46.92	60.22
CDY39835	Canola	cytosol	46.71	59.95
CDY31343	Canola	cytosol	46.71	59.95
TraesCS3A01G414400.2	Wheat	cytosol	53.72	58.03
CDY50776	Canola	cytosol	8.92	56.76
CDX79314	Canola	cytosol, plastid	45.44	56.46
CDX67997	Canola	cytosol	45.22	56.35
Zm00001d012101_P002	Maize	mitochondrion	59.87	55.51
CDX99619	Canola	cytosol	7.86	54.41
CDX88533	Canola	plastid	46.28	54.09
CDX87387	Canola	plastid	46.07	53.98
CDY27585	Canola	cytosol	14.86	53.85
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	60.93	53.05
Os12t0288400-01	Rice	endoplasmic reticulum, extracellular, vacuole	61.15	52.75
TraesCS5D01G122000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	59.24	51.96
HORVU5Hr1G039100.3	Barley	endoplasmic reticulum, extracellular, golgi	59.02	51.58
KRG95016	Soybean	nucleus, peroxisome, plasma membrane	39.28	51.1
TraesCS5A01G103800.2	Wheat	endoplasmic reticulum, extracellular, golgi	58.17	49.02
HORVU3Hr1G092250.6	Barley	plastid	57.75	49.01
OQU79014	Sorghum	plastid	53.29	47.45
CDY52873	Canola	plastid	20.81	32.03
CDX85680	Canola	mitochondrion, plastid	9.98	31.97
CDX72278	Canola	plastid	22.93	29.11
CDX98983	Canola	cytosol, plastid	13.8	26.53
CDY03984	Canola	cytosol	15.29	24.24
CDY00235	Canola	cytosol	20.59	16.72
CDX98984	Canola	cytosol	20.81	16.7
CDX70026	Canola	cytosol	20.81	16.64
CDX78287	Canola	cytosol	20.59	16.52
CDX81044	Canola	cytosol	20.38	16.35
CDX86951	Canola	cytosol	19.96	16.21
CDY06335	Canola	cytosol	19.53	15.78
CDY22660	Canola	cytosol	19.32	15.66
CDY25816	Canola	cytosol	1.49	14.29

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	GO:A0A078C312	EnsemblPlants:CDX70564	ProteinID:CDX70564
ProteinID:CDX70564.1	ncoils:Coil	InterPro:Copine	EnsemblPlantsGene:GSBRNA2T00140404001	InterPro:IPR001841	InterPro:IPR002035
InterPro:IPR013083	InterPro:IPR036465	PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857
PANTHER:PTHR10857:SF28	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0004EF2753	InterPro:VWF_A
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

BnaC03g06480D

Coordinates

chrLK031791:-:1028511..1031230

Molecular Weight (calculated)

51863.6 Da

IEP (calculated)

5.180

GRAVY (calculated)

-0.582

Length

471 amino acids

Sequence
(BLAST)

001: MGTGNSKESW RQESSSSSFR SASASSASPS SSSWASHQSY PQYGPESYNY PPTPSYAPPP PPEYAQPPPA PSYSTQPYSQ PPSYSHGNDK KRLERKYSKI
101: SDDYSSLEQV TEALARAGLE SSNLIVGIDF TKSNEWTGAR SFNRKSLHYI GNNPNPYEQA ITIIGRTLAA FDEDNLIPCY GFGDASTHDQ DVFSFNPEDR
201: FCNGFEEVLG RYKEIVPQLK LAGPTSFAPI IDMAMTIVEQ SGGQYHVLVI IADGQVTRSV DTENGQLSPQ EQKTVEAIVQ ASKLPLSIVL VGVGDGPWDM
301: MREFDDNIPS RAFDNFQFVN FTEIMSKNKA QSLKETEFAL SALMEIPQQY KATLELNLLG RRNGNIQERF PLPPPMHGGG SSYNNKPKAN RVPSFKPSVP
401: PYPTESYPVR SSPAPPPATT SASENQLCPI CLSNPKDMAF GCGHQTCCEC GPDLEMCPIC RAPIQTRIKL Y

Best Arabidopsis Sequence Match ( AT5G14420.1 )
(BLAST)

001: MGTGNSKENW RQSSFRSTSA SSASPSSSSW ASQQSYPQYG AESYNYPPPP SYAQPPEYTQ PPPPLYSTQP YSAPSYSAPP SQSYGSDNKK RLERKYSKIS
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY

Arabidopsis Description

RGLG2E3 ubiquitin-protein ligase RGLG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY87]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.