Factsheet for VIT_14s0066g00290.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g09640.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	67.68	72.06
VIT_01s0137g00460.t01	Wine grape	nucleus	68.76	71.72
KRG94356	Soybean	nucleus	65.73	70.79
AT5G14420.2	Thale cress	nucleus, plastid	69.63	68.59
KRG93947	Soybean	nucleus	73.32	68.15
CDX85597	Canola	cytosol, plastid	66.59	68.07
Bra023465.1-P	Field mustard	cytosol, plastid	66.59	68.07
KRH58251	Soybean	nucleus	72.45	68.02
CDX70564	Canola	cytosol, plastid	69.2	67.73
CDX91062	Canola	cytosol, plastid	66.38	67.7
CDY09854	Canola	nucleus, plastid	68.33	67.6
CDX69581	Canola	nucleus, plastid	68.11	67.38
Bra008758.1-P	Field mustard	nucleus	67.9	67.17
Bra006253.1-P	Field mustard	nucleus, plastid	68.55	67.09
CDX78576	Canola	cytosol, plastid	68.55	67.09
CDY49066	Canola	cytosol	66.81	66.96
CDY37509	Canola	cytosol	66.38	66.52
Bra039105.1-P	Field mustard	nucleus	65.73	66.45
Bra000997.1-P	Field mustard	nucleus	65.94	66.38
CDX91935	Canola	cytosol	65.73	66.3
CDX74310	Canola	cytosol	65.73	66.16
Solyc02g093520.2.1	Tomato	nucleus	70.5	66.06
TraesCS5B01G111900.1	Wheat	cytosol	33.62	64.32
PGSC0003DMT400032842	Potato	mitochondrion	67.25	63.79
Os01t0908700-01	Rice	plasma membrane, plastid	61.39	63.45
EES04073	Sorghum	nucleus	62.69	62.96
AT3G01650.2	Thale cress	cytosol	66.59	62.78
GSMUA_Achr9P29460_001	Banana	nucleus	63.56	62.61
TraesCS3B01G449200.1	Wheat	cytosol	63.34	62.53
TraesCS3D01G408900.1	Wheat	cytosol	63.12	62.45
Zm00001d048784_P001	Maize	cytosol	41.65	62.34
GSMUA_Achr8P01300_001	Banana	nucleus	58.57	62.21
GSMUA_Achr6P06710_001	Banana	nucleus	61.39	61.52
Zm00001d042437_P005	Maize	cytosol	62.26	60.81
VIT_04s0044g01620.t01	Wine grape	cytosol	47.94	60.22
VIT_00s0780g00040.t01	Wine grape	cytosol, mitochondrion, nucleus	55.31	58.35
TraesCS3A01G414400.2	Wheat	cytosol	55.1	58.26
VIT_19s0085g01000.t01	Wine grape	extracellular	48.59	58.18
Zm00001d012101_P002	Maize	mitochondrion	62.47	56.69
KRG95016	Soybean	nucleus, peroxisome, plasma membrane	42.73	54.42
Os12t0288400-01	Rice	endoplasmic reticulum, extracellular, vacuole	62.26	52.56
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	61.39	52.31
TraesCS5D01G122000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	60.09	51.58
HORVU5Hr1G039100.3	Barley	endoplasmic reticulum, extracellular, golgi	59.87	51.21
HORVU3Hr1G092250.6	Barley	plastid	59.22	49.19
TraesCS5A01G103800.2	Wheat	endoplasmic reticulum, extracellular, golgi	59.44	49.02
AT1G24545.1	Thale cress	cytosol	19.09	48.35
OQU79014	Sorghum	plastid	53.8	46.88
VIT_18s0001g15760.t01	Wine grape	cytosol, extracellular	6.94	33.33
VIT_18s0072g00560.t01	Wine grape	peroxisome	11.28	30.95
VIT_14s0030g00540.t01	Wine grape	cytosol	18.66	18.78
VIT_14s0030g00550.t01	Wine grape	cytosol	18.87	18.2
VIT_14s0030g00600.t01	Wine grape	cytosol	19.52	17.31
VIT_12s0121g00080.t01	Wine grape	cytosol	20.61	15.97
VIT_14s0030g00500.t01	Wine grape	cytosol	20.17	15.66
VIT_17s0000g00210.t01	Wine grape	cytosol	19.52	15.62
VIT_14s0030g00570.t01	Wine grape	cytosol	20.39	14.09

Protein Annotations

EntrezGene:100247388	wikigene:100247388	MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	ProteinID:CBI34842
ProteinID:CBI34842.3	InterPro:Copine	UniProt:D7TWG7	EMBL:FN596252	InterPro:IPR001841	InterPro:IPR002035
InterPro:IPR013083	InterPro:IPR036465	EntrezGene:LOC100247388	wikigene:LOC100247388	PFAM:PF07002	PFAM:PF13920
PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF28	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850
UniParc:UPI00015C9C95	ArrayExpress:VIT_14s0066g00290	EnsemblPlantsGene:VIT_14s0066g00290	EnsemblPlants:VIT_14s0066g00290.t01	InterPro:VWF_A	unigene:Vvi.545
RefSeq:XP_002271885	RefSeq:XP_002271885.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf

Description

No Description!

Coordinates

chr14:+:26831396..26837128

Molecular Weight (calculated)

51067.5 Da

IEP (calculated)

5.050

GRAVY (calculated)

-0.521

Length

461 amino acids

Sequence
(BLAST)

001: MGSSSSKRTS FRSASSSSRS NHGGYSQSDY GQEYQNYPPQ QPSYPSYAPP QQPYPSYAPP QQYQSHEPPQ QNYSSSQGNG DNRRRLERMY SRIADDYRSL
101: DEVTAALARA GLESSNLIVG IDFTKSNEWT GARSFNRQSL HHVGDGLNPY QQAISIIGKT LAAFDEDNMI PCFGFGDAST HDQDVFSFYE DERFCNGFEE
201: VLSRYREIVP RLRLAGPTSF APIIEMAMTI VNHSGGQYHV LVIIADGQVT RSVDTAHGQL SPQEQKTVEA IVEASKLPLS IILVGVGDGP WDMMREFDDN
301: IPARAFDNFQ FVNFTEIMSK NVDLSRKETE FALAALMEIP SQYKATIELN ILGGRKGDAP ERVPLPTPMY YGATSFFNSS KPSRTTSFQP SVPPYPEDSS
401: PVGTAPPATS STFDNQLCPI CLTNVKNMAF GCGHQTCCEC GPDLETCPIC RSPIQTRIKL Y

Best Arabidopsis Sequence Match ( AT5G14420.1 )
(BLAST)

001: MGTGNSKENW RQSSFRSTSA SSASPSSSSW ASQQSYPQYG AESYNYPPPP SYAQPPEYTQ PPPPLYSTQP YSAPSYSAPP SQSYGSDNKK RLERKYSKIS
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY

Arabidopsis Description

RGLG2E3 ubiquitin-protein ligase RGLG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY87]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.