Factsheet for Bra008758.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69581	Canola	nucleus, plastid	99.79	99.79
Bra023465.1-P	Field mustard	cytosol, plastid	87.55	90.47
Bra006253.1-P	Field mustard	nucleus, plastid	91.42	90.45
AT5G14420.2	Thale cress	nucleus, plastid	88.2	87.82
Bra000997.1-P	Field mustard	nucleus	75.11	76.42
Bra039105.1-P	Field mustard	nucleus	73.82	75.44
KRG94356	Soybean	nucleus	62.88	68.46
VIT_14s0066g00290.t01	Wine grape	mitochondrion	67.17	67.9
Bra032793.1-P	Field mustard	nucleus	55.36	67.54
Bra004260.1-P	Field mustard	plastid	62.02	65.53
Zm00001d048784_P001	Maize	cytosol	43.13	65.26
TraesCS5B01G111900.1	Wheat	cytosol	33.05	63.9
GSMUA_Achr9P29460_001	Banana	nucleus	64.16	63.89
GSMUA_Achr8P01300_001	Banana	nucleus	59.01	63.36
Os01t0908700-01	Rice	plasma membrane, plastid	60.3	63.0
KRH58251	Soybean	nucleus	66.31	62.93
Solyc02g093520.2.1	Tomato	nucleus	65.88	62.4
EES04073	Sorghum	nucleus	61.37	62.31
TraesCS3B01G449200.1	Wheat	cytosol	62.23	62.1
KRG93947	Soybean	nucleus	66.09	62.1
TraesCS3D01G408900.1	Wheat	cytosol	62.02	62.02
GSMUA_Achr6P06710_001	Banana	nucleus	60.52	61.3
Zm00001d042437_P005	Maize	cytosol	61.8	61.02
PGSC0003DMT400032842	Potato	mitochondrion	62.88	60.29
Bra024254.1-P	Field mustard	mitochondrion	46.78	59.56
Bra031942.1-P	Field mustard	cytosol, mitochondrion, nucleus	42.92	58.48
TraesCS3A01G414400.2	Wheat	cytosol	54.29	58.03
Zm00001d012101_P002	Maize	mitochondrion	61.16	56.1
Bra035112.1-P	Field mustard	plastid	47.0	54.48
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	61.37	52.87
Os12t0288400-01	Rice	endoplasmic reticulum, extracellular, vacuole	61.59	52.56
TraesCS5D01G122000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	59.66	51.77
HORVU5Hr1G039100.3	Barley	endoplasmic reticulum, extracellular, golgi	59.44	51.39
KRG95016	Soybean	nucleus, peroxisome, plasma membrane	39.91	51.38
HORVU3Hr1G092250.6	Barley	plastid	58.58	49.19
TraesCS5A01G103800.2	Wheat	endoplasmic reticulum, extracellular, golgi	58.58	48.84
OQU79014	Sorghum	plastid	53.65	47.26
Bra012681.1-P	Field mustard	cytosol	9.44	39.29
Bra018339.1-P	Field mustard	cytosol	11.37	35.81
Bra021976.1-P	Field mustard	plastid	23.18	29.03
Bra014181.1-P	Field mustard	plastid	21.03	25.79
Bra007134.1-P	Field mustard	mitochondrion	16.09	20.66
Bra010041.1-P	Field mustard	cytosol	20.82	16.72
Bra009273.1-P	Field mustard	cytosol	20.6	16.3
Bra005931.1-P	Field mustard	cytosol	20.39	16.18
Bra029301.1-P	Field mustard	cytosol, plastid	20.17	16.18
Bra031645.1-P	Field mustard	cytosol	19.31	15.44

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra008758	EnsemblPlants:Bra008758.1	EnsemblPlants:Bra008758.1-P
ncoils:Coil	InterPro:Copine	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465
UniProt:M4CX11	PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF28
SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI00025451B3	InterPro:VWF_A	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:	:

Description

AT5G14420 (E=3e-202) RGLG2 | RGLG2 (RING domain Ligase2); ubiquitin-protein ligase

Coordinates

chrA10:+:13732035..13734035

Molecular Weight (calculated)

51270.9 Da

IEP (calculated)

5.288

GRAVY (calculated)

-0.543

Length

466 amino acids

Sequence
(BLAST)

001: MGTGNSKENW RQESSSSSRS ASSPSAASSS SWASHQSYPQ YGPDSYTYPP TPSYAPPPPE YTHPPPSPSY TTQPYSQPPP SQSFGNNKKR LERKYSKISD
101: EYSSLEQVTE ALAGAGLESS NLIVGIDFTK SNEWTGARSF NRKSLHFIGN SPNPYEQAIT IIGRTLAAFD EDNLIPCYGF GDASTHDQDV FSFNPDDRFC
201: NGFEEVLGRY KEIVPQLKLA GPTSFAPIID MAMTIVEQSG GQYHVLVIIA DGQVTRSVDT ENGQLSPQEQ KTVDAIVQAS KLPLSIVLVG VGDGPWDMMR
301: EFDDNIPSRA FDNFQFVNFT EIMSKNKAQS FKETEFALSA LMEIPQQYKA TLELNLLGRR NGYIPERFPL PPPMHGGYNK PKATPRVSSF NPSVPPYPTE
401: SYSVRSSPAP PATTTSASDN QLCPICLSNP KDMAFGCGHQ TCCECGPDLQ MCPICRAPIH TRIKLY

Best Arabidopsis Sequence Match ( AT5G14420.1 )
(BLAST)

001: MGTGNSKENW RQSSFRSTSA SSASPSSSSW ASQQSYPQYG AESYNYPPPP SYAQPPEYTQ PPPPLYSTQP YSAPSYSAPP SQSYGSDNKK RLERKYSKIS
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY

Arabidopsis Description

RGLG2E3 ubiquitin-protein ligase RGLG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY87]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.