Factsheet for Bra012681.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018339.1-P	Field mustard	cytosol	100.0	75.68
CDY03984	Canola	cytosol	77.68	29.29
Bra035112.1-P	Field mustard	plastid	53.57	14.93
KRH07106	Soybean	cytosol, plastid	33.04	12.71
Bra024254.1-P	Field mustard	mitochondrion	41.07	12.57
GSMUA_Achr4P09310_001	Banana	endoplasmic reticulum, golgi	41.07	12.47
TraesCS7A01G381200.1	Wheat	cytosol, plastid	44.64	11.34
TraesCS7D01G377500.1	Wheat	plastid	44.64	11.01
Bra032793.1-P	Field mustard	nucleus	37.5	10.99
TraesCS7B01G283100.1	Wheat	cytosol	42.86	10.84
Bra004260.1-P	Field mustard	plastid	41.96	10.66
TraesCS7B01G283200.1	Wheat	cytosol	42.86	10.53
TraesCS7D01G377600.1	Wheat	plastid	42.86	10.5
TraesCS7A01G381300.1	Wheat	plastid	42.86	10.5
Zm00001d046554_P003	Maize	cytosol, plastid	41.07	10.34
KXG20338	Sorghum	nucleus	41.07	10.29
Os06t0608800-02	Rice	nucleus	41.07	10.29
VIT_00s0780g00040.t01	Wine grape	cytosol, mitochondrion, nucleus	39.29	10.07
Bra006253.1-P	Field mustard	nucleus, plastid	41.07	9.77
Bra023465.1-P	Field mustard	cytosol, plastid	39.29	9.76
Bra008758.1-P	Field mustard	nucleus	39.29	9.44
Bra039105.1-P	Field mustard	nucleus	38.39	9.43
Bra000997.1-P	Field mustard	nucleus	38.39	9.39
Zm00001d036831_P006	Maize	cytosol	36.61	8.95
Bra031942.1-P	Field mustard	cytosol, mitochondrion, nucleus	25.89	8.48
Bra021976.1-P	Field mustard	plastid	19.64	5.91
Bra014181.1-P	Field mustard	plastid	18.75	5.53
KRH07102	Soybean	cytosol	5.36	4.29
Bra007134.1-P	Field mustard	mitochondrion	12.5	3.86
Bra010041.1-P	Field mustard	cytosol	14.29	2.76
Bra029301.1-P	Field mustard	cytosol, plastid	14.29	2.75
Bra031645.1-P	Field mustard	cytosol	13.39	2.57
Bra005931.1-P	Field mustard	cytosol	13.39	2.56
Bra009273.1-P	Field mustard	cytosol	13.39	2.55

Protein Annotations

EnsemblPlants:Bra012681.1	EnsemblPlants:Bra012681.1-P	EnsemblPlantsGene:Bra012681	InterPro:Copine	PANTHER:PTHR10857	PANTHER:PTHR10857:SF47
PFAM:PF07002	UniParc:UPI0002540936	UniProt:M4D871	MapMan:35.1	:	:

Description

AT1G79380 (E=2e-021) | copine-related

Coordinates

chrA03:+:22769501..22771024

Molecular Weight (calculated)

12697.2 Da

IEP (calculated)

6.255

GRAVY (calculated)

-0.355

Length

112 amino acids

Sequence
(BLAST)

001: MLRLSLGPRV TRGVDKAEGE LSQQEIYVNA SSYALSIALI GVGDGRWEDM RKFDDKIPKR EFDNFKLKKH LITASYVDDE TSMLHEMAKN AWITVLGETT
101: SHNSVNLTWP LV

Best Arabidopsis Sequence Match ( AT1G79380.1 )
(BLAST)

001: MTMGNFLKRF GSGKSRSSRN MTLGTTSSQS HEPSPSDPSL SLADNTNATK KKYALIPDRF SSLDQVSKAL REAGLESSNL ILGVDFTKSN EWTGKTSFDG
101: KCLHALGETS NPYEKAIFVI GQTLAPFDED NLIPCFGFGD STTHDEEVFG FHSDNSPCHG FEEVLACYKR IAPNLRLSGP TSYGPLIDAA VDIVEKNNGQ
201: FHVLVIVADG QVTRGTDMAE GELSQQEKTT IDAIVNASSY ALSIVLVGVG DGPWEDMRKF DDKIPKREFD NFQFVNFTEI MTRNSPESAK ETAFALAALM
301: EIPFQYQAAI ELRLLGKQTG LAKTIVPRPP PIPYTPPTNA ELPSTASPAS PEQTQSCPIC LTNRKDVAFS CGHMTCGDCG SKISNCPICR VRITNRLKLY
401: T

Arabidopsis Description

RGLG4E3 ubiquitin-protein ligase RGLG4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAL0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.