Factsheet for Bra031942.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31343	Canola	cytosol	100.0	93.19
Bra024254.1-P	Field mustard	mitochondrion	90.64	84.7
AT5G63970.1	Thale cress	cytosol	89.77	83.65
VIT_04s0044g01620.t01	Wine grape	cytosol	66.08	61.58
GSMUA_Achr10P...	Banana	nucleus	64.91	58.12
Solyc09g065870.2.1	Tomato	nucleus	69.59	56.67
TraesCS3A01G503400.1	Wheat	cytosol	62.87	56.28
KRH59596	Soybean	nucleus	69.59	55.87
TraesCS3D01G510000.1	Wheat	cytosol	56.14	55.81
KRH64018	Soybean	nucleus	70.47	55.79
KXG34172	Sorghum	nucleus	62.87	55.56
TraesCS3B01G566800.1	Wheat	cytosol	61.4	55.41
Os01t0960500-01	Rice	plasma membrane	62.57	55.3
GSMUA_Achr5P25930_001	Banana	extracellular	35.96	51.9
GSMUA_Achr5P25940_001	Banana	cytosol	31.87	50.23
Bra032793.1-P	Field mustard	nucleus	54.39	48.69
Zm00001d011821_P007	Maize	cytosol	59.94	47.79
Bra035112.1-P	Field mustard	plastid	54.97	46.77
KRH40948	Soybean	nucleus	47.08	45.1
Bra023465.1-P	Field mustard	cytosol, plastid	58.77	44.57
Bra039105.1-P	Field mustard	nucleus	58.48	43.86
Bra000997.1-P	Field mustard	nucleus	58.48	43.67
Bra008758.1-P	Field mustard	nucleus	58.48	42.92
Bra004260.1-P	Field mustard	plastid	55.26	42.86
Bra006253.1-P	Field mustard	nucleus, plastid	58.19	42.25
HORVU3Hr1G110870.14	Barley	mitochondrion	58.77	42.14
KRH53919	Soybean	nucleus	43.86	40.0
TraesCS3D01G509900.2	Wheat	cytosol	55.85	39.87
TraesCS3A01G503300.1	Wheat	cytosol	55.56	39.75
HORVU3Hr1G110850.8	Barley	cytosol	39.47	38.79
TraesCS3B01G566700.1	Wheat	cytosol	54.39	38.27
Zm00001d006136_P001	Maize	cytosol	10.23	36.08
Bra012681.1-P	Field mustard	cytosol	8.48	25.89
Bra018339.1-P	Field mustard	cytosol	11.11	25.68
Bra021976.1-P	Field mustard	plastid	25.15	23.12
Bra014181.1-P	Field mustard	plastid	23.1	20.79
Bra007134.1-P	Field mustard	mitochondrion	15.2	14.33
Bra009273.1-P	Field mustard	cytosol	21.93	12.73
Bra005931.1-P	Field mustard	cytosol	21.05	12.27
Bra010041.1-P	Field mustard	cytosol	20.76	12.24
Bra029301.1-P	Field mustard	cytosol, plastid	20.76	12.22
Bra031645.1-P	Field mustard	cytosol	20.18	11.84

Protein Annotations

EnsemblPlants:Bra031942.1	EnsemblPlants:Bra031942.1-P	EnsemblPlantsGene:Bra031942	Gene3D:3.30.40.10	InterPro:Copine	InterPro:IPR001841
InterPro:IPR002035	InterPro:IPR013083	InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR10857
PANTHER:PTHR10857:SF98	PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	SEG:seg	SMART:SM00327
SUPFAM:SSF57850	UniParc:UPI000254652F	UniProt:M4ET12	MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	:

Description

AT5G63970 (E=5e-109) | copine-related

Coordinates

chrA02:-:26992161..26994086

Molecular Weight (calculated)

38187.8 Da

IEP (calculated)

7.910

GRAVY (calculated)

-0.326

Length

342 amino acids

Sequence
(BLAST)

001: MSRCNKRNPQ PSYIADHFNS LDQVITSLRE AGLESSNLIL GIDFTKSNEW TGRYSFNRKS LHAIGKRQNP YEQAISIIGR TLSPFDEDDL IPCFGFGDAT
101: TRDQYVFSFY PDNKSCEGLD KAVKRYREIV PHLKLSGPTS FAPVIDAAID IVEQNNMQYH VLVIIADGQV TRNPDVPPGR LSPQEEATIN SIMAASHYPL
201: SIVLVGFVNF TEIMSQHKDA AKKEAAFALA ALMEIPFQYK ATLSLDRKQV SGSRLRHKPL PPPPEVIERD NAVRKMPNPV TETAEKSDRT APVTQPVCPI
301: CLTNPKDMAF SCGHTTCKEC GVVVKICPMC REPITTRIRL YT

Best Arabidopsis Sequence Match ( AT5G63970.2 )
(BLAST)

001: MNMSNKRNQQ PSYIADHFSS LDQVITSLRE AGLESSNLIL GIDFTKSNEW TGRYSFNRKS LHAIGKRQNP YEKAISIIGR TLSPFDEDDL IPCFGFGDVT
101: TRDQYVFSFY PENKSCDGLE NAVKRYREIV PHLKLSGPTS FAPVIDAAIN IVEQNNMQYH VLVIIADGQV TRNPDVPLGR LSPQEEATMN SIMAASHYPL
201: SIVLVGVGDG PWDTMKQFDD NIPHREFDNF QFVNFTKIMS EHKDAAKKEA AFALAALMEI PFQYKATLSL NRKPVRSSHQ HHKPLPPPPE VIERDNAVRS
301: VPNQMTETAE KSDRLAPSTV PVCPICLTNP KDMAFSCGHT TCKECGVVIT TCPLCRQPIT TRIRLYT

Arabidopsis Description

RGLG3E3 ubiquitin-protein ligase RGLG3 [Source:UniProtKB/Swiss-Prot;Acc:Q8RX26]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.