Factsheet for Bra039105.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37509	Canola	cytosol	99.34	98.48
Bra000997.1-P	Field mustard	nucleus	91.67	91.27
AT3G01650.2	Thale cress	cytosol	83.99	78.32
Bra023465.1-P	Field mustard	cytosol, plastid	73.46	74.28
Bra008758.1-P	Field mustard	nucleus	75.44	73.82
Bra006253.1-P	Field mustard	nucleus, plastid	76.1	73.67
KRG94356	Soybean	nucleus	63.38	67.52
VIT_14s0066g00290.t01	Wine grape	mitochondrion	66.45	65.73
Bra032793.1-P	Field mustard	nucleus	54.61	65.18
Zm00001d048784_P001	Maize	cytosol	42.32	62.66
GSMUA_Achr8P01300_001	Banana	nucleus	59.43	62.44
Os01t0908700-01	Rice	plasma membrane, plastid	60.96	62.33
GSMUA_Achr9P29460_001	Banana	nucleus	63.6	61.97
TraesCS5B01G111900.1	Wheat	cytosol	32.68	61.83
KRH58251	Soybean	nucleus	66.45	61.71
KRG93947	Soybean	nucleus	67.11	61.69
Bra004260.1-P	Field mustard	plastid	59.65	61.68
EES04073	Sorghum	nucleus	62.06	61.66
Solyc02g093520.2.1	Tomato	nucleus	66.45	61.59
GSMUA_Achr6P06710_001	Banana	nucleus	61.84	61.3
Bra024254.1-P	Field mustard	mitochondrion	48.9	60.93
TraesCS3B01G449200.1	Wheat	cytosol	62.06	60.6
TraesCS3D01G408900.1	Wheat	cytosol	61.84	60.52
Zm00001d042437_P005	Maize	cytosol	62.06	59.96
PGSC0003DMT400032842	Potato	mitochondrion	62.94	59.05
Bra031942.1-P	Field mustard	cytosol, mitochondrion, nucleus	43.86	58.48
TraesCS3A01G414400.2	Wheat	cytosol	54.39	56.88
Zm00001d012101_P002	Maize	mitochondrion	62.5	56.1
Bra035112.1-P	Field mustard	plastid	46.93	53.23
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	60.31	50.83
Os12t0288400-01	Rice	endoplasmic reticulum, extracellular, vacuole	60.53	50.55
TraesCS5D01G122000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	58.99	50.09
KRG95016	Soybean	nucleus, peroxisome, plasma membrane	39.69	50.0
HORVU5Hr1G039100.3	Barley	endoplasmic reticulum, extracellular, golgi	58.33	49.35
TraesCS5A01G103800.2	Wheat	endoplasmic reticulum, extracellular, golgi	59.21	48.3
HORVU3Hr1G092250.6	Barley	plastid	58.11	47.75
OQU79014	Sorghum	plastid	53.51	46.12
Bra012681.1-P	Field mustard	cytosol	9.43	38.39
Bra018339.1-P	Field mustard	cytosol	11.84	36.49
Bra021976.1-P	Field mustard	plastid	23.46	28.76
Bra014181.1-P	Field mustard	plastid	21.49	25.79
Bra007134.1-P	Field mustard	mitochondrion	16.67	20.94
Bra009273.1-P	Field mustard	cytosol	21.93	16.98
Bra010041.1-P	Field mustard	cytosol	21.49	16.9
Bra031645.1-P	Field mustard	cytosol	21.27	16.64
Bra005931.1-P	Field mustard	cytosol	21.27	16.52
Bra029301.1-P	Field mustard	cytosol, plastid	20.83	16.35

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra039105	EnsemblPlants:Bra039105.1	EnsemblPlants:Bra039105.1-P
ncoils:Coil	InterPro:Copine	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465
UniProt:M4FDD4	PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF28
SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI000254786C	InterPro:VWF_A	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:	:

Description

AT3G01650 (E=2e-194) RGLG1 | RGLG1 (RING domain Ligase1); protein binding / zinc ion binding

Coordinates

chrA05:+:23927140..23929381

Molecular Weight (calculated)

50098.7 Da

IEP (calculated)

5.624

GRAVY (calculated)

-0.537

Length

456 amino acids

Sequence
(BLAST)

001: MGGGNSKEDW RQEPPSSSSS SSSWASHQSY PQSGPGSYNY PPPPSYSPAP SFGGQPPSYS QEEQGYAYPY PPPRPQPQPS QTHAAPSDRK KFDRRYSKIS
101: DNYASLDQVS EALGRAGLES SNLILGIDFT KSNEWTGAKS FSKKSLHHIS NTLNPYEQAI TIIGRTLAAF DEDNLIPCFG FGDASTHDQD VFSFYPEGRS
201: CNGFEQVLAR YRDIVPHLKL AGPTSFAPII EMAMRVVEQS SGQYHVLVII ADGQVTRSVD TEHGQLSPQE QKTVDAIVKA SALPLSIVLV GVGDGPWDMM
301: QEFDDNIPSR AFDNFQFVNF TEIMSKNKEQ SRKETEFALS ALMEIPPQYK ATIELGLLGR RNGNIPERIP LPPPVHGGST FFNPSKASPT PSFEPSVPTY
401: PMESKDVDDN QLCPICLSNP KNMAFGCGHQ TCCECGPGLK VCPICRAPIQ TRIKLY

Best Arabidopsis Sequence Match ( AT3G01650.1 )
(BLAST)

001: MGGGNSKEES SSPSSSSWAS HQSYPQYGPD SYNYPPPPTY APAPSPAPAP APVPAPSPAS SYGPQYSQEG YASQPNNPPP PTYAPAPSPA SSYGHQYSQE
101: GYASAASQPN YPPPPSQSQV ADRKKFDRRY SKISDNYSSL LQVSEALGRA GLESSNLIVG IDFTKSNEWT GAKSFNRKSL HHLSNTPNPY EQAITIIGRT
201: LAAFDEDNLI PCYGFGDAST HDQDVFSFYP EGRFCNGFEE VLARYREIVP QLKLAGPTSF APIIEMAMTV VEQSSGQYHV LVIIADGQVT RSVDTEHGRL
301: SPQEQKTVDA IVKASTLPLS IVLVGVGDGP WDMMQEFDDN IPARAFDNFQ FVNFTEIMSK NKDQSRKETE FALSALMEIP PQYKATIELN LLGVRNGNIP
401: QRIPLPPPVQ SGSSFSSSRI PNFEPSVPPY PFESKQMSSA DDIQLCPICL SNPKNMAFGC GHQTCCECGP DLKVCPICRA PIQTRIKLY

Arabidopsis Description

RGLG1E3 ubiquitin-protein ligase RGLG1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.