Factsheet for GSMUA_Achr6P06710_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P01300_001	Banana	nucleus	62.17	65.9
GSMUA_Achr2P05470_001	Banana	nucleus	53.48	65.78
CDY27584	Canola	cytosol	33.04	65.52
VIT_17s0000g09640.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	61.09	64.9
KRH63659	Soybean	cytosol, mitochondrion, nucleus, plastid	60.22	64.87
TraesCS5B01G111900.1	Wheat	cytosol	33.7	64.32
CDX84957	Canola	cytosol	53.04	63.38
VIT_01s0137g00460.t01	Wine grape	nucleus	60.65	63.12
Bra032793.1-P	Field mustard	nucleus	52.39	63.09
KRH54288	Soybean	cytosol, mitochondrion, nucleus, plastid	58.7	63.08
GSMUA_Achr9P29460_001	Banana	nucleus	64.13	63.03
KRG94356	Soybean	nucleus	58.48	62.85
CDX85597	Canola	cytosol, plastid	60.65	61.86
Bra023465.1-P	Field mustard	cytosol, plastid	60.65	61.86
Bra039105.1-P	Field mustard	nucleus	61.3	61.84
CDY49066	Canola	cytosol	61.74	61.74
CDX91062	Canola	cytosol, plastid	60.65	61.73
CDX91935	Canola	cytosol	61.3	61.71
Bra000997.1-P	Field mustard	nucleus	61.3	61.57
CDY37509	Canola	cytosol	61.52	61.52
VIT_14s0066g00290.t01	Wine grape	mitochondrion	61.52	61.39
CDX74310	Canola	cytosol	61.09	61.35
AT5G14420.2	Thale cress	nucleus, plastid	62.17	61.11
CDY09854	Canola	nucleus, plastid	61.74	60.94
CDY56212	Canola	plastid	58.26	60.77
Bra004260.1-P	Field mustard	plastid	58.26	60.77
KRH43098	Soybean	endoplasmic reticulum, golgi	60.65	60.65
GSMUA_Achr9P12830_001	Banana	cytosol, mitochondrion, nucleus, plastid	53.91	60.64
CDY01855	Canola	cytosol, plastid	58.04	60.54
Bra008758.1-P	Field mustard	nucleus	61.3	60.52
CDX69581	Canola	nucleus, plastid	61.3	60.52
CDX70564	Canola	cytosol, plastid	61.96	60.51
AT1G67800.2	Thale cress	plasma membrane	59.13	60.04
KRH59243	Soybean	endoplasmic reticulum, golgi	59.78	59.78
GSMUA_Achr7P03440_001	Banana	cytosol	40.65	59.74
Solyc03g111870.2.1	Tomato	nucleus	56.74	59.73
Bra006253.1-P	Field mustard	nucleus, plastid	60.87	59.45
CDX78576	Canola	cytosol, plastid	60.87	59.45
Solyc02g093520.2.1	Tomato	nucleus	62.83	58.74
KRG97516	Soybean	golgi, plasma membrane	58.26	58.39
GSMUA_Achr7P20180_001	Banana	cytosol, nucleus, plastid	22.39	57.54
AT3G01650.2	Thale cress	cytosol	61.09	57.46
KRH31355	Soybean	golgi, plasma membrane	57.61	57.24
GSMUA_Achr5P25940_001	Banana	cytosol	26.74	56.68
GSMUA_Achr4P09310_001	Banana	endoplasmic reticulum, golgi	45.43	56.64
KRH58251	Soybean	nucleus	60.43	56.62
KRG93947	Soybean	nucleus	60.87	56.45
GSMUA_Achr10P...	Banana	nucleus	46.74	56.28
PGSC0003DMT400032842	Potato	mitochondrion	59.13	55.97
GSMUA_AchrUn_...	Banana	mitochondrion	49.78	55.05
GSMUA_Achr5P25930_001	Banana	extracellular	28.26	54.85
Os12t0288400-01	Rice	endoplasmic reticulum, extracellular, vacuole	61.74	52.01
TraesCS5D01G122000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	60.22	51.58
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	60.65	51.57
HORVU5Hr1G039100.3	Barley	endoplasmic reticulum, extracellular, golgi	59.57	50.83
TraesCS5A01G103800.2	Wheat	endoplasmic reticulum, extracellular, golgi	60.0	49.37
CDY27585	Canola	cytosol	13.7	48.46
OQU79014	Sorghum	plastid	54.13	47.07
KRG95016	Soybean	nucleus, peroxisome, plasma membrane	36.3	46.13
AT1G24545.1	Thale cress	cytosol	16.52	41.76
PGSC0003DMT400039186	Potato	cytosol	56.52	27.08
GSMUA_AchrUn_...	Banana	cytosol	9.35	23.12
GSMUA_AchrUn_...	Banana	cytosol, golgi, plastid	17.39	18.26
GSMUA_Achr5P08050_001	Banana	cytosol	20.0	15.49

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	InterPro:Copine	EnsemblPlantsGene:GSMUA_Achr6G06710_001	EnsemblPlants:GSMUA_Achr6P06710_001
EnsemblPlants:GSMUA_Achr6T06710_001	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	UniProt:M0T4S0
PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF28	SMART:SM00327
SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0002964008	InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	InterPro:vWFA_dom_sf	:	:	:	:

Description

E3 ubiquitin-protein ligase RGLG2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G06710_001]

Coordinates

chr6:+:4547222..4549719

Molecular Weight (calculated)

49792.1 Da

IEP (calculated)

6.008

GRAVY (calculated)

-0.453

Length

460 amino acids

Sequence
(BLAST)

001: MGAASSTESS SRDARDYPEQ PYSTTSFSRG WSSYPPPPPP PPSQSYDSPP VAYPASRSYY PPPPPPSYDF ISGQTGTSSS QATGRQPKAE AKYSRIADDY
101: SSLEQVTEAL SRAGLESSNL IVGIDFTKSN EWTGKLSFHG RSLHSIGAAT NPYEQAISII GRTLSAFDED NMIPCFGFGD ATTHDGDVFS FYPGERPCNG
201: FEEALERYRE ITPHLRLSGP TSFAPMIEMA VTIVEQSGGQ YHVLLIIADG QVTRSVDTDL GRLSPQEQRT VDAIVKASEC PLSIILVGVG DGPWDMMKEF
301: DDNIPARSFD NFQFVNFTSI MEKGTQKSRK ETEFALAALM EIPSQYRATI DLGILGRHSG TSPRRVPLPP PTGSSPAAFP GPKASGSAGP KHSSSSYPHH
401: RTTTTPTATA PVETQACPVC LSNPRNMAFG CGHQTCVDCG PRLSFCPICR SSIQTRIKLY

Best Arabidopsis Sequence Match ( AT5G14420.1 )
(BLAST)

001: MGTGNSKENW RQSSFRSTSA SSASPSSSSW ASQQSYPQYG AESYNYPPPP SYAQPPEYTQ PPPPLYSTQP YSAPSYSAPP SQSYGSDNKK RLERKYSKIS
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY

Arabidopsis Description

RGLG2E3 ubiquitin-protein ligase RGLG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY87]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.