Factsheet for VIT_01s0137g00460.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g09640.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	72.85	74.36
KRH43098	Soybean	endoplasmic reticulum, golgi	75.11	72.17
KRH59243	Soybean	endoplasmic reticulum, golgi	74.66	71.74
CDY27584	Canola	cytosol	37.33	71.12
KRG97516	Soybean	golgi, plasma membrane	73.3	70.59
Bra032793.1-P	Field mustard	nucleus	60.18	69.63
KRH31355	Soybean	golgi, plasma membrane	72.62	69.33
CDX84957	Canola	cytosol	60.18	69.09
VIT_14s0066g00290.t01	Wine grape	mitochondrion	71.72	68.76
Os01t0908700-01	Rice	plasma membrane, plastid	65.84	65.25
GSMUA_Achr9P29460_001	Banana	nucleus	69.0	65.17
EES04073	Sorghum	nucleus	67.65	65.14
Bra004260.1-P	Field mustard	plastid	64.93	65.08
CDY01855	Canola	cytosol, plastid	64.71	64.85
Zm00001d048784_P001	Maize	cytosol	45.02	64.61
TraesCS3D01G408900.1	Wheat	cytosol	68.1	64.59
CDY56212	Canola	plastid	64.25	64.4
TraesCS3B01G449200.1	Wheat	cytosol	67.87	64.24
GSMUA_Achr8P01300_001	Banana	nucleus	62.9	64.06
Zm00001d042437_P005	Maize	cytosol	66.97	62.71
AT1G67800.2	Thale cress	plasma membrane	63.57	62.03
TraesCS5B01G111900.1	Wheat	cytosol	33.71	61.83
VIT_04s0044g01620.t01	Wine grape	cytosol	50.91	61.31
GSMUA_Achr6P06710_001	Banana	nucleus	63.12	60.65
TraesCS3A01G414400.2	Wheat	cytosol	58.82	59.63
VIT_00s0780g00040.t01	Wine grape	cytosol, mitochondrion, nucleus	58.82	59.5
Zm00001d012101_P002	Maize	mitochondrion	66.74	58.07
VIT_19s0085g01000.t01	Wine grape	extracellular	49.55	56.88
CDY27585	Canola	cytosol	15.84	53.85
TraesCS5D01G122000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	62.67	51.58
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	62.67	51.2
HORVU5Hr1G039100.3	Barley	endoplasmic reticulum, extracellular, golgi	62.22	51.02
HORVU3Hr1G092250.6	Barley	plastid	64.03	50.99
Os12t0288400-01	Rice	endoplasmic reticulum, extracellular, vacuole	62.9	50.92
TraesCS5A01G103800.2	Wheat	endoplasmic reticulum, extracellular, golgi	62.44	49.37
OQU79014	Sorghum	plastid	54.3	45.37
VIT_18s0001g15760.t01	Wine grape	cytosol, extracellular	7.47	34.38
VIT_18s0072g00560.t01	Wine grape	peroxisome	11.99	31.55
VIT_14s0030g00540.t01	Wine grape	cytosol	19.68	19.0
VIT_14s0030g00550.t01	Wine grape	cytosol	19.91	18.41
VIT_14s0030g00600.t01	Wine grape	cytosol	21.04	17.88
VIT_17s0000g00210.t01	Wine grape	cytosol	23.08	17.71
VIT_12s0121g00080.t01	Wine grape	cytosol	22.85	16.97
VIT_14s0030g00500.t01	Wine grape	cytosol	22.4	16.67
VIT_14s0030g00570.t01	Wine grape	cytosol	22.62	14.99

Protein Annotations

EntrezGene:100267987	wikigene:100267987	MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	ProteinID:CBI16816
ProteinID:CBI16816.3	InterPro:Copine	UniProt:D7SMD7	EMBL:FN594954	InterPro:IPR001841	InterPro:IPR002035
InterPro:IPR013083	InterPro:IPR036465	EntrezGene:LOC100267987	wikigene:LOC100267987	PFAM:PF07002	PFAM:PF13920
PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF28	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850
TIGR:TC59601	UniParc:UPI00015C9228	ArrayExpress:VIT_01s0137g00460	EnsemblPlantsGene:VIT_01s0137g00460	EnsemblPlants:VIT_01s0137g00460.t01	InterPro:VWF_A
unigene:Vvi.10089	RefSeq:XP_002282202	RefSeq:XP_002282202.2	RefSeq:XP_010650735.1	RefSeq:XP_010650743.1	RefSeq:XP_010650748.1
RefSeq:XP_010650751.1	RefSeq:XP_010650756.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf

Description

No Description!

Coordinates

chr1:-:6977522..6983072

Molecular Weight (calculated)

49103.2 Da

IEP (calculated)

6.621

GRAVY (calculated)

-0.556

Length

442 amino acids

Sequence
(BLAST)

001: MGGKSSKRRS GREYPSFESS SFNHHGYSQS QPYEEAYPAQ PYHTPQHHSP PPPRYYSGAQ TPHRHPQLDR RYSRIADNYN SLDQVTAALA QAGLESSNLI
101: VGIDFTKSNE WTGSRSFNRK SLHHIGRGQN PYEQAISIIG KTLSAFDEDN LIPCFGFGDA STHDQDIFSF YQDERPCNGF EEVLMRYREL VPSLRLAGPT
201: SFAPIIEMAS TIVEKSGGQY HVLLIIADGQ VTRSVDTQHG QLSSQEQKTI DAIVKASKYP LSIILVGVGD GPWDVMREFD DNIPARAFDN FQFVNFTEIM
301: SKNVDSSRTQ TEFALAALME IPSQYKATID LNTLGVRRGN APTRVALPPP QYGTPSFSSS SKPYHSNSFQ KSAESYPEYE AAVSTGPSSN SLYDNKVCPI
401: CLSNPKDMAF GCGHQTCCEC GVDLNSCPIC RSPIQTRIKL YQ

Best Arabidopsis Sequence Match ( AT5G14420.1 )
(BLAST)

001: MGTGNSKENW RQSSFRSTSA SSASPSSSSW ASQQSYPQYG AESYNYPPPP SYAQPPEYTQ PPPPLYSTQP YSAPSYSAPP SQSYGSDNKK RLERKYSKIS
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY

Arabidopsis Description

RGLG2E3 ubiquitin-protein ligase RGLG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY87]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.