Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 4
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU79014 | Sorghum | plastid | 84.84 | 86.77 |
| TraesCS5B01G111900.1 | Wheat | cytosol | 37.89 | 85.06 |
| Os12t0288400-01 | Rice | endoplasmic reticulum, extracellular, vacuole | 82.07 | 81.32 |
| TraesCS5D01G122000.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 76.71 | 77.28 |
| HORVU5Hr1G039100.3 | Barley | endoplasmic reticulum, extracellular, golgi | 75.97 | 76.25 |
| TraesCS5A01G103800.2 | Wheat | endoplasmic reticulum, extracellular, golgi | 75.6 | 73.17 |
| Zm00001d048784_P001 | Maize | cytosol | 36.6 | 64.29 |
| Bra023465.1-P | Field mustard | cytosol, plastid | 53.23 | 63.86 |
| CDX85597 | Canola | cytosol, plastid | 53.23 | 63.86 |
| VIT_17s0000g09640.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 50.83 | 63.51 |
| KRH54288 | Soybean | cytosol, mitochondrion, nucleus, plastid | 50.09 | 63.32 |
| KRH63659 | Soybean | cytosol, mitochondrion, nucleus, plastid | 49.91 | 63.23 |
| CDY27584 | Canola | cytosol | 26.99 | 62.93 |
| CDX91062 | Canola | cytosol, plastid | 52.5 | 62.83 |
| VIT_01s0137g00460.t01 | Wine grape | nucleus | 51.2 | 62.67 |
| KRG94356 | Soybean | nucleus | 49.54 | 62.62 |
| AT5G14420.2 | Thale cress | nucleus, plastid | 53.79 | 62.18 |
| Bra032793.1-P | Field mustard | nucleus | 43.81 | 62.04 |
| CDX84957 | Canola | cytosol | 43.99 | 61.82 |
| VIT_14s0066g00290.t01 | Wine grape | mitochondrion | 52.31 | 61.39 |
| CDX69581 | Canola | nucleus, plastid | 52.87 | 61.37 |
| Bra008758.1-P | Field mustard | nucleus | 52.87 | 61.37 |
| Bra000997.1-P | Field mustard | nucleus | 51.76 | 61.14 |
| CDX74310 | Canola | cytosol | 51.76 | 61.14 |
| CDX91935 | Canola | cytosol | 51.57 | 61.05 |
| CDY09854 | Canola | nucleus, plastid | 52.5 | 60.94 |
| CDX70564 | Canola | cytosol, plastid | 53.05 | 60.93 |
| Solyc03g111870.2.1 | Tomato | nucleus | 49.17 | 60.87 |
| Bra006253.1-P | Field mustard | nucleus, plastid | 52.87 | 60.72 |
| GSMUA_Achr6P06710_001 | Banana | nucleus | 51.57 | 60.65 |
| CDX78576 | Canola | cytosol, plastid | 52.68 | 60.51 |
| Zm00001d042437_P005 | Maize | cytosol | 52.68 | 60.38 |
| Bra039105.1-P | Field mustard | nucleus | 50.83 | 60.31 |
| KRH43098 | Soybean | endoplasmic reticulum, golgi | 51.2 | 60.22 |
| CDY49066 | Canola | cytosol | 51.2 | 60.22 |
| CDY37509 | Canola | cytosol | 51.02 | 60.0 |
| KRH59243 | Soybean | endoplasmic reticulum, golgi | 50.28 | 59.13 |
| CDY56212 | Canola | plastid | 47.87 | 58.73 |
| Bra004260.1-P | Field mustard | plastid | 47.87 | 58.73 |
| CDY01855 | Canola | cytosol, plastid | 47.69 | 58.5 |
| KRG97516 | Soybean | golgi, plasma membrane | 49.54 | 58.39 |
| Zm00001d046554_P003 | Maize | cytosol, plastid | 47.32 | 57.53 |
| AT1G67800.2 | Thale cress | plasma membrane | 48.06 | 57.4 |
| KRH31355 | Soybean | golgi, plasma membrane | 48.8 | 57.02 |
| Zm00001d035211_P001 | Maize | mitochondrion | 42.51 | 56.93 |
| Solyc02g093520.2.1 | Tomato | nucleus | 51.2 | 56.3 |
| KRG93947 | Soybean | nucleus | 51.39 | 56.05 |
| AT3G01650.2 | Thale cress | cytosol | 50.65 | 56.03 |
| Zm00001d012101_P002 | Maize | mitochondrion | 52.5 | 55.91 |
| KRH58251 | Soybean | nucleus | 50.65 | 55.8 |
| PGSC0003DMT400032842 | Potato | mitochondrion | 49.35 | 54.94 |
| Zm00001d006136_P001 | Maize | cytosol | 9.8 | 54.64 |
| Zm00001d036831_P006 | Maize | cytosol | 45.66 | 53.93 |
| Zm00001d024705_P001 | Maize | cytosol | 8.69 | 50.0 |
| CDY27585 | Canola | cytosol | 11.83 | 49.23 |
| Zm00001d034150_P001 | Maize | cytosol | 14.97 | 47.93 |
| Zm00001d011821_P007 | Maize | cytosol | 37.52 | 47.32 |
| KRG95016 | Soybean | nucleus, peroxisome, plasma membrane | 31.61 | 47.24 |
| Zm00001d005369_P001 | Maize | mitochondrion | 10.17 | 45.08 |
| Zm00001d041244_P001 | Maize | extracellular | 8.87 | 44.86 |
| AT1G24545.1 | Thale cress | cytosol | 13.86 | 41.21 |
| PGSC0003DMT400039186 | Potato | cytosol | 48.8 | 27.5 |
| Zm00001d037872_P001 | Maize | plasma membrane | 17.19 | 15.79 |
| Zm00001d016615_P002 | Maize | plasma membrane | 14.42 | 14.34 |
Protein Annotations
| MapMan:19.2.2.1.5.3.2 | MapMan:19.2.2.1.6.2 | Gene3D:3.30.40.10 | EMBL:BT085779 | UniProt:C4J4N2 | InterPro:Copine |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016874 | InterPro:IPR001841 | InterPro:IPR002035 | InterPro:IPR013083 |
| InterPro:IPR036465 | ProteinID:ONM32341.1 | PFAM:PF07002 | PFAM:PF13920 | PFscan:PS50089 | PANTHER:PTHR10857 |
| PANTHER:PTHR10857:SF68 | SMART:SM00184 | SMART:SM00327 | SUPFAM:SSF53300 | SUPFAM:SSF57850 | TMHMM:TMhelix |
| UniParc:UPI0001A4C7F1 | InterPro:VWF_A | EnsemblPlantsGene:Zm00001d041073 | EnsemblPlants:Zm00001d041073_P001 | EnsemblPlants:Zm00001d041073_T001 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | InterPro:vWFA_dom_sf | : | : | : |
Description
E3 ubiquitin-protein ligase RGLG1
Coordinates
chr3:+:95280130..95310416
Molecular Weight (calculated)
59080.0 Da
IEP (calculated)
5.634
GRAVY (calculated)
-0.219
Length
541 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGFLAVVGK VGTFLLWVLF LVLQTATRIV GSLLASSAEQ QDDHHQESAA ARRRSPPASP HPELYEPASA SLAQLWDPPP LPHLAFAPAA DESSSSSSLR
101: RRASAPLPRA DEDFVVPSSA YSRPTVGVAH THSVSAPPLR AIETRAVPSR LVTAGGKRPR LERKYSKIVD QYRSLDEVIE ALAQAGLESS NLIIGIDFTK
201: SNEWTGKNCF NGMSLHNISD NPNPYEQAIS IIGKTLSAFD EDNLIPCFGF GDASTHDQDV FAFYPDERPC NGFQEALARY REIVPHLRLS GPTSFAPIID
301: MATTIVEQSG GQYHVLVIIA DGQVTRSVDT EFGQLSTQEQ MTVDAIVQAS QFPLSIILVG VGDGPWDMMK EFDDNIPARS FDNFQFVNFT AIMSKKISQS
401: KKETEFALSA LMEIPLQYKA TLELGILGRR IGESPERIPL PPPFASYSTV SRAEPSRANS YRSVPSHPRE EPAVNSTITA SVTSPSAAES RVLEPQMCPV
501: CLSKPRDMAF GCGHQTCSEC GPQVTDCPIC RRPIDTRVKL Y
101: RRASAPLPRA DEDFVVPSSA YSRPTVGVAH THSVSAPPLR AIETRAVPSR LVTAGGKRPR LERKYSKIVD QYRSLDEVIE ALAQAGLESS NLIIGIDFTK
201: SNEWTGKNCF NGMSLHNISD NPNPYEQAIS IIGKTLSAFD EDNLIPCFGF GDASTHDQDV FAFYPDERPC NGFQEALARY REIVPHLRLS GPTSFAPIID
301: MATTIVEQSG GQYHVLVIIA DGQVTRSVDT EFGQLSTQEQ MTVDAIVQAS QFPLSIILVG VGDGPWDMMK EFDDNIPARS FDNFQFVNFT AIMSKKISQS
401: KKETEFALSA LMEIPLQYKA TLELGILGRR IGESPERIPL PPPFASYSTV SRAEPSRANS YRSVPSHPRE EPAVNSTITA SVTSPSAAES RVLEPQMCPV
501: CLSKPRDMAF GCGHQTCSEC GPQVTDCPIC RRPIDTRVKL Y
001: MGTGNSKENW RQSSFRSTSA SSASPSSSSW ASQQSYPQYG AESYNYPPPP SYAQPPEYTQ PPPPLYSTQP YSAPSYSAPP SQSYGSDNKK RLERKYSKIS
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY
Arabidopsis Description
RGLG2E3 ubiquitin-protein ligase RGLG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY87]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.