Factsheet for Bra000997.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74310	Canola	cytosol	99.13	99.13
Bra039105.1-P	Field mustard	nucleus	91.27	91.67
AT3G01650.2	Thale cress	cytosol	85.15	79.75
Bra023465.1-P	Field mustard	cytosol, plastid	75.55	76.72
Bra006253.1-P	Field mustard	nucleus, plastid	77.29	75.16
Bra008758.1-P	Field mustard	nucleus	76.42	75.11
KRG94356	Soybean	nucleus	63.54	67.99
VIT_14s0066g00290.t01	Wine grape	mitochondrion	66.38	65.94
Bra032793.1-P	Field mustard	nucleus	54.37	65.18
Zm00001d048784_P001	Maize	cytosol	43.01	63.96
GSMUA_Achr8P01300_001	Banana	nucleus	59.39	62.67
GSMUA_Achr9P29460_001	Banana	nucleus	63.76	62.39
KRH58251	Soybean	nucleus	66.81	62.32
TraesCS5B01G111900.1	Wheat	cytosol	32.75	62.24
KRG93947	Soybean	nucleus	67.25	62.1
EES04073	Sorghum	nucleus	62.23	62.09
Bra004260.1-P	Field mustard	plastid	59.61	61.9
Os01t0908700-01	Rice	plasma membrane, plastid	60.04	61.66
GSMUA_Achr6P06710_001	Banana	nucleus	61.57	61.3
TraesCS3B01G449200.1	Wheat	cytosol	61.79	60.6
Solyc02g093520.2.1	Tomato	nucleus	65.07	60.57
TraesCS3D01G408900.1	Wheat	cytosol	61.57	60.52
Bra024254.1-P	Field mustard	mitochondrion	48.25	60.38
Zm00001d042437_P005	Maize	cytosol	61.79	59.96
Bra031942.1-P	Field mustard	cytosol, mitochondrion, nucleus	43.67	58.48
PGSC0003DMT400032842	Potato	mitochondrion	61.57	58.02
TraesCS3A01G414400.2	Wheat	cytosol	54.15	56.88
Zm00001d012101_P002	Maize	mitochondrion	62.23	56.1
Bra035112.1-P	Field mustard	plastid	46.94	53.48
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	61.14	51.76
Os12t0288400-01	Rice	endoplasmic reticulum, extracellular, vacuole	61.14	51.28
TraesCS5D01G122000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	59.39	50.65
KRG95016	Soybean	nucleus, peroxisome, plasma membrane	39.74	50.28
HORVU5Hr1G039100.3	Barley	endoplasmic reticulum, extracellular, golgi	58.73	49.91
TraesCS5A01G103800.2	Wheat	endoplasmic reticulum, extracellular, golgi	58.95	48.3
HORVU3Hr1G092250.6	Barley	plastid	57.86	47.75
OQU79014	Sorghum	plastid	54.37	47.07
Bra012681.1-P	Field mustard	cytosol	9.39	38.39
Bra018339.1-P	Field mustard	cytosol	11.79	36.49
Bra021976.1-P	Field mustard	plastid	22.93	28.23
Bra014181.1-P	Field mustard	plastid	20.96	25.26
Bra007134.1-P	Field mustard	mitochondrion	16.59	20.94
Bra010041.1-P	Field mustard	cytosol	20.96	16.55
Bra009273.1-P	Field mustard	cytosol	21.18	16.47
Bra031645.1-P	Field mustard	cytosol	20.52	16.12
Bra005931.1-P	Field mustard	cytosol	20.52	16.01
Bra029301.1-P	Field mustard	cytosol, plastid	20.09	15.83

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra000997	EnsemblPlants:Bra000997.1	EnsemblPlants:Bra000997.1-P
InterPro:Copine	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	UniProt:M4C9W8
PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF28	SMART:SM00327
SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI00025407E4	InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	InterPro:vWFA_dom_sf	:	:	:	:

Description

AT3G01650 (E=3e-194) RGLG1 | RGLG1 (RING domain Ligase1); protein binding / zinc ion binding

Coordinates

chrA03:-:14310194..14312387

Molecular Weight (calculated)

50422.2 Da

IEP (calculated)

5.277

GRAVY (calculated)

-0.500

Length

458 amino acids

Sequence
(BLAST)

001: MGGGNSKEDW RQESPSSSSS SWASHQSYPQ SGPGSYNYPP PPSYSPAPAP SPSPAPSFGA HLPQPPPYTQ EEGYAYPYPP PQPHPTTDRK KFDRRYSKIS
101: DNYASLDQVS EALARAGLES SNLILGIDFT KSNEWTGAKS FNKKSLHHIS NTPNPYEQAI TIIGRTLAAF DEDNLIPCFG FGDASTHDQD VFSFYPEGRS
201: CNGFEQVLAR YRDIVPHLKL AGPTSFAPII EMAMTVVEQS SGQYHVLVII ADGQVTRSVD TEHGQLSPQE QRTVDAIVKA SALPLSIVLV GVGDGPWDMM
301: QEFDDNIPAR AFDNFQFVNF TEIMSKNKEQ SRKETEFALS ALMEIPPQYK ATIELGLLGR RNGSIQERIP LPPPVQQSGA TFFKPSPIQS FEPSVPTYPM
401: ESKNMTTSVD DNQLCPICLS NPKNMAFGCG HQTCCECGPD LKVCPICRAP IQTRIKLY

Best Arabidopsis Sequence Match ( AT3G01650.1 )
(BLAST)

001: MGGGNSKEES SSPSSSSWAS HQSYPQYGPD SYNYPPPPTY APAPSPAPAP APVPAPSPAS SYGPQYSQEG YASQPNNPPP PTYAPAPSPA SSYGHQYSQE
101: GYASAASQPN YPPPPSQSQV ADRKKFDRRY SKISDNYSSL LQVSEALGRA GLESSNLIVG IDFTKSNEWT GAKSFNRKSL HHLSNTPNPY EQAITIIGRT
201: LAAFDEDNLI PCYGFGDAST HDQDVFSFYP EGRFCNGFEE VLARYREIVP QLKLAGPTSF APIIEMAMTV VEQSSGQYHV LVIIADGQVT RSVDTEHGRL
301: SPQEQKTVDA IVKASTLPLS IVLVGVGDGP WDMMQEFDDN IPARAFDNFQ FVNFTEIMSK NKDQSRKETE FALSALMEIP PQYKATIELN LLGVRNGNIP
401: QRIPLPPPVQ SGSSFSSSRI PNFEPSVPPY PFESKQMSSA DDIQLCPICL SNPKNMAFGC GHQTCCECGP DLKVCPICRA PIQTRIKLY

Arabidopsis Description

RGLG1E3 ubiquitin-protein ligase RGLG1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.