Factsheet for TraesCS5B01G111900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27585	Canola	cytosol	25.31	46.92
TraesCS5D01G122000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	98.76	44.32
HORVU5Hr1G039100.3	Barley	endoplasmic reticulum, extracellular, golgi	96.27	43.04
TraesCS5A01G103800.2	Wheat	endoplasmic reticulum, extracellular, golgi	97.93	42.22
Os12t0288400-01	Rice	endoplasmic reticulum, extracellular, vacuole	87.55	38.64
KRG95016	Soybean	nucleus, peroxisome, plasma membrane	57.26	38.12
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	85.06	37.89
KRH54288	Soybean	cytosol, mitochondrion, nucleus, plastid	65.15	36.68
KRH63659	Soybean	cytosol, mitochondrion, nucleus, plastid	63.49	35.83
VIT_17s0000g09640.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	64.32	35.8
Bra023465.1-P	Field mustard	cytosol, plastid	65.98	35.26
CDX85597	Canola	cytosol, plastid	65.98	35.26
CDX91062	Canola	cytosol, plastid	65.15	34.73
Bra032793.1-P	Field mustard	nucleus	53.53	33.77
VIT_01s0137g00460.t01	Wine grape	nucleus	61.83	33.71
GSMUA_Achr6P06710_001	Banana	nucleus	64.32	33.7
VIT_14s0066g00290.t01	Wine grape	mitochondrion	64.32	33.62
AT5G14420.2	Thale cress	nucleus, plastid	65.15	33.55
KRG94356	Soybean	nucleus	59.34	33.41
CDX84957	Canola	cytosol	53.11	33.25
TraesCS3B01G449200.1	Wheat	cytosol	64.32	33.19
Bra008758.1-P	Field mustard	nucleus	63.9	33.05
CDX69581	Canola	nucleus, plastid	63.9	33.05
Bra006253.1-P	Field mustard	nucleus, plastid	64.32	32.91
CDX78576	Canola	cytosol, plastid	64.32	32.91
CDX70564	Canola	cytosol, plastid	64.32	32.91
CDY09854	Canola	nucleus, plastid	63.49	32.83
CDX91935	Canola	cytosol	62.24	32.82
CDX74310	Canola	cytosol	62.24	32.75
Bra000997.1-P	Field mustard	nucleus	62.24	32.75
Bra039105.1-P	Field mustard	nucleus	61.83	32.68
CDY49066	Canola	cytosol	62.24	32.61
Bra004260.1-P	Field mustard	plastid	59.34	32.43
CDY56212	Canola	plastid	59.34	32.43
CDY01855	Canola	cytosol, plastid	59.34	32.43
CDY37509	Canola	cytosol	61.83	32.39
KRH59243	Soybean	endoplasmic reticulum, golgi	61.41	32.17
KRH43098	Soybean	endoplasmic reticulum, golgi	61.41	32.17
TraesCS7B01G134400.1	Wheat	cytosol	52.28	31.58
AT1G67800.2	Thale cress	plasma membrane	59.34	31.57
KRG97516	Soybean	golgi, plasma membrane	59.34	31.15
Solyc03g111870.2.1	Tomato	nucleus	56.43	31.12
Solyc02g093520.2.1	Tomato	nucleus	63.49	31.1
KRH58251	Soybean	nucleus	63.07	30.96
KRG93947	Soybean	nucleus	63.49	30.85
OQU79014	Sorghum	plastid	67.63	30.81
AT3G01650.2	Thale cress	cytosol	61.83	30.47
KRH31355	Soybean	golgi, plasma membrane	58.09	30.24
TraesCS3B01G566800.1	Wheat	cytosol	47.3	30.08
TraesCS7B01G283200.1	Wheat	cytosol	56.85	30.04
TraesCS7B01G283100.1	Wheat	cytosol	54.77	29.8
PGSC0003DMT400032842	Potato	mitochondrion	58.92	29.22
TraesCS7B01G208900.1	Wheat	mitochondrion	46.89	26.9
TraesCS5B01G371300.1	Wheat	endoplasmic reticulum, vacuole	30.29	23.03
TraesCS3B01G566700.1	Wheat	cytosol	42.32	20.99
CDY27584	Canola	cytosol	15.77	16.38
AT1G24545.1	Thale cress	cytosol	11.2	14.84
PGSC0003DMT400039186	Potato	cytosol	55.6	13.96
TraesCS6B01G074300.2	Wheat	cytosol	17.43	7.12
TraesCS1B01G247700.2	Wheat	cytosol	17.01	6.95
TraesCS6B01G235200.1	Wheat	plastid	16.6	6.93

Protein Annotations

EnsemblPlants:TraesCS5B01G111900.1	EnsemblPlantsGene:TraesCS5B01G111900	Gene3D:3.30.40.10	InterPro:Copine	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR10857	PANTHER:PTHR10857:SF28	PFAM:PF07002	PFAM:PF13920
PFscan:PS50089	SUPFAM:SSF57850	TIGR:cd16729	MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	:

Description

No Description!

Coordinates

chr5B:+:170583165..170619236

Molecular Weight (calculated)

26250.3 Da

IEP (calculated)

4.712

GRAVY (calculated)

-0.140

Length

241 amino acids

Sequence
(BLAST)

001: MATTIVEQSG GQYHVLVIIA DGQVTRSVNT EFGQLSTQEQ MTVDAIVQAS EFPLSIILVG VGDGPWDMMN EFDDNIPARS FDNFQFVNFT GIMSKKISQS
101: NKETEFALSA LMEIPLQYKA TLQLGILGRR LAKSPEQVPL PPPFASYNTT SRAAPSWANN FQSVPSNLRE EATLDSTITP SVTPPPAADA RASELQFCPV
201: CLAKPRDMAF GCGHQTCSGC GPQVADCPIC RRPIDTRVKL Y

Best Arabidopsis Sequence Match ( AT3G01650.1 )
(BLAST)

001: MGGGNSKEES SSPSSSSWAS HQSYPQYGPD SYNYPPPPTY APAPSPAPAP APVPAPSPAS SYGPQYSQEG YASQPNNPPP PTYAPAPSPA SSYGHQYSQE
101: GYASAASQPN YPPPPSQSQV ADRKKFDRRY SKISDNYSSL LQVSEALGRA GLESSNLIVG IDFTKSNEWT GAKSFNRKSL HHLSNTPNPY EQAITIIGRT
201: LAAFDEDNLI PCYGFGDAST HDQDVFSFYP EGRFCNGFEE VLARYREIVP QLKLAGPTSF APIIEMAMTV VEQSSGQYHV LVIIADGQVT RSVDTEHGRL
301: SPQEQKTVDA IVKASTLPLS IVLVGVGDGP WDMMQEFDDN IPARAFDNFQ FVNFTEIMSK NKDQSRKETE FALSALMEIP PQYKATIELN LLGVRNGNIP
401: QRIPLPPPVQ SGSSFSSSRI PNFEPSVPPY PFESKQMSSA DDIQLCPICL SNPKNMAFGC GHQTCCECGP DLKVCPICRA PIQTRIKLY

Arabidopsis Description

RGLG1E3 ubiquitin-protein ligase RGLG1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.