Factsheet for TraesCS3B01G566800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G503400.1	Wheat	cytosol	95.78	95.03
TraesCS3D01G510000.1	Wheat	cytosol	85.75	94.48
KXG34172	Sorghum	nucleus	86.02	84.24
Zm00001d011821_P007	Maize	cytosol	83.38	73.66
HORVU3Hr1G110870.14	Barley	mitochondrion	90.24	71.7
GSMUA_Achr10P...	Banana	nucleus	70.98	70.42
Zm00001d006136_P001	Maize	cytosol	17.41	68.04
VIT_04s0044g01620.t01	Wine grape	cytosol	63.32	65.4
CDX84471	Canola	cytosol, mitochondrion	61.48	64.19
Bra024254.1-P	Field mustard	mitochondrion	61.48	63.66
CDY43775	Canola	cytosol, mitochondrion	61.48	63.49
AT5G63970.1	Thale cress	cytosol	60.95	62.94
CDY31343	Canola	cytosol	60.42	62.4
CDY39835	Canola	cytosol	60.16	62.13
Bra031942.1-P	Field mustard	cytosol, mitochondrion, nucleus	55.41	61.4
Solyc09g065870.2.1	Tomato	nucleus	64.38	58.1
TraesCS3B01G566700.1	Wheat	cytosol	73.09	57.0
KRH59596	Soybean	nucleus	63.06	56.1
KRH64018	Soybean	nucleus	63.06	55.32
GSMUA_Achr5P25940_001	Banana	cytosol	29.29	51.15
TraesCS7B01G134400.1	Wheat	cytosol	53.83	51.13
KRH40948	Soybean	nucleus	45.38	48.18
TraesCS7B01G283100.1	Wheat	cytosol	55.94	47.86
TraesCS5B01G111900.1	Wheat	cytosol	30.08	47.3
TraesCS5B01G371300.1	Wheat	endoplasmic reticulum, vacuole	39.31	47.0
TraesCS7B01G283200.1	Wheat	cytosol	55.94	46.49
TraesCS3B01G449200.1	Wheat	cytosol	56.99	46.25
TraesCS7B01G208900.1	Wheat	mitochondrion	50.66	45.71
KRH53919	Soybean	nucleus	40.9	41.33
TraesCS6B01G074300.2	Wheat	cytosol	21.64	13.9
TraesCS1B01G247700.2	Wheat	cytosol	21.11	13.56
TraesCS6B01G235200.1	Wheat	plastid	20.05	13.17

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	InterPro:Copine	InterPro:IPR001841	InterPro:IPR002035
InterPro:IPR013083	InterPro:IPR036465	PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857
PANTHER:PTHR10857:SF104	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS3B01G566800
EnsemblPlants:TraesCS3B01G566800.1	InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	TIGR:cd01459	TIGR:cd16729
SEG:seg	InterPro:vWFA_dom_sf	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:798503330..798507647

Molecular Weight (calculated)

41695.1 Da

IEP (calculated)

6.294

GRAVY (calculated)

-0.318

Length

379 amino acids

Sequence
(BLAST)

001: MWGERAHHKH GHHHDNVGSR DRQPKFIADN YSSVDEVVAA LREAGLESSN LILGIDFTKS NEWSGRHSFG RKSLHAISGT PNPYEQAISI IGRTLSPFDD
101: DNLIPCFGFG DASTHDHSVF SFYQENRPCR GFEEVLDRYR QIVPHLNLSG PTSFAPLIYA AMSVVESSNC QYHVLVIIAD GQVTTSNSSA RLSPQEQATI
201: QAIVDASFYP LSIVMVGVGD GPWDAMQHFD DCIPDRAFDN FQFVNFTGLM STSKDMSKKE AAFALAALME IPTQYKATQG LRPPERHAQN PNPPRILPPP
301: SKVLEHDNIA AASRAPDATS QSTDVGYTAS DEKVCPICLT NPKDMAFQCG HLTCKECGPT LSTCPLCRAP ITVRVRLFS

Best Arabidopsis Sequence Match ( AT5G63970.2 )
(BLAST)

001: MNMSNKRNQQ PSYIADHFSS LDQVITSLRE AGLESSNLIL GIDFTKSNEW TGRYSFNRKS LHAIGKRQNP YEKAISIIGR TLSPFDEDDL IPCFGFGDVT
101: TRDQYVFSFY PENKSCDGLE NAVKRYREIV PHLKLSGPTS FAPVIDAAIN IVEQNNMQYH VLVIIADGQV TRNPDVPLGR LSPQEEATMN SIMAASHYPL
201: SIVLVGVGDG PWDTMKQFDD NIPHREFDNF QFVNFTKIMS EHKDAAKKEA AFALAALMEI PFQYKATLSL NRKPVRSSHQ HHKPLPPPPE VIERDNAVRS
301: VPNQMTETAE KSDRLAPSTV PVCPICLTNP KDMAFSCGHT TCKECGVVIT TCPLCRQPIT TRIRLYT

Arabidopsis Description

RGLG3E3 ubiquitin-protein ligase RGLG3 [Source:UniProtKB/Swiss-Prot;Acc:Q8RX26]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.