Factsheet for TraesCS3A01G503400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G510000.1	Wheat	cytosol	88.48	98.26
TraesCS3B01G566800.1	Wheat	cytosol	95.03	95.78
KXG34172	Sorghum	nucleus	86.13	85.01
Zm00001d011821_P007	Maize	cytosol	82.98	73.89
HORVU3Hr1G110870.14	Barley	mitochondrion	90.58	72.54
GSMUA_Achr10P...	Banana	nucleus	71.2	71.2
Zm00001d006136_P001	Maize	cytosol	17.28	68.04
VIT_04s0044g01620.t01	Wine grape	cytosol	62.83	65.4
CDX84471	Canola	cytosol, mitochondrion	62.04	65.29
Bra024254.1-P	Field mustard	mitochondrion	62.3	65.03
CDY43775	Canola	cytosol, mitochondrion	62.3	64.85
AT5G63970.1	Thale cress	cytosol	61.52	64.03
CDY31343	Canola	cytosol	61.26	63.76
CDY39835	Canola	cytosol	60.99	63.49
Bra031942.1-P	Field mustard	cytosol, mitochondrion, nucleus	56.28	62.87
TraesCS3A01G503300.1	Wheat	cytosol	75.13	60.04
Solyc09g065870.2.1	Tomato	nucleus	64.4	58.57
KRH59596	Soybean	nucleus	63.35	56.81
KRH64018	Soybean	nucleus	62.83	55.56
GSMUA_Achr5P25940_001	Banana	cytosol	30.1	53.0
TraesCS7A01G308900.1	Wheat	mitochondrion	53.4	50.87
TraesCS7A01G381200.1	Wheat	cytosol, plastid	56.02	48.53
KRH40948	Soybean	nucleus	45.03	48.18
TraesCS5A01G368900.1	Wheat	endoplasmic reticulum, extracellular	39.53	47.78
TraesCS7A01G381300.1	Wheat	plastid	55.76	46.61
TraesCS3A01G414400.2	Wheat	cytosol	49.21	43.12
KRH53919	Soybean	nucleus	40.58	41.33
TraesCS5A01G103800.2	Wheat	endoplasmic reticulum, extracellular, golgi	55.76	38.1
TraesCS1A01G236100.4	Wheat	cytosol	21.2	13.73
TraesCS6A01G189800.1	Wheat	cytosol	20.16	13.41
TraesCS6A01G058200.2	Wheat	cytosol, plastid	21.47	12.95
TraesCS7A01G414000.1	Wheat	cytosol	17.8	11.56

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	InterPro:Copine	InterPro:IPR001841	InterPro:IPR002035
InterPro:IPR013083	InterPro:IPR036465	PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857
PANTHER:PTHR10857:SF104	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS3A01G503400
EnsemblPlants:TraesCS3A01G503400.1	InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	TIGR:cd01459	TIGR:cd16729
SEG:seg	InterPro:vWFA_dom_sf	:	:	:	:

Description

No Description!

Coordinates

chr3A:-:726115088..726118420

Molecular Weight (calculated)

41918.4 Da

IEP (calculated)

6.453

GRAVY (calculated)

-0.288

Length

382 amino acids

Sequence
(BLAST)

001: MWGERAHHRH GHHHDHVPSG GSKDRQPKFI ADNYSSVDEV IAALREAGLE SSNLILGIDF TKSNEWSGRH SFGRKSLHAI SGTPNPYEQA ISIIGRTLSP
101: FDDDNLIPCF GFGDASTHDH SVFSFYQENR PCRGFEEVLD RYRQIVPHLN LSGPTSFAPL IYAAMSVVES SNCQYHVLVI IADGQVTTST SGGRLSPQEQ
201: ATIQAIVDAS FYPLSIVMVG VGDGPWDAMQ HFDDCIPDRA FDNFQFVNFT GIMSSSKDMS KKEAAFALAA LMEIPTQYKA TQGLRPPERH AQNANPPRIL
301: PPPSKVLERD NIVAASHTPA ATSQSTDVGY TVSDEKVCPI CLTNPKDMAF QCGHLTCKEC GPTLSTCPLC RAPITVRVRL FS

Best Arabidopsis Sequence Match ( AT5G63970.2 )
(BLAST)

001: MNMSNKRNQQ PSYIADHFSS LDQVITSLRE AGLESSNLIL GIDFTKSNEW TGRYSFNRKS LHAIGKRQNP YEKAISIIGR TLSPFDEDDL IPCFGFGDVT
101: TRDQYVFSFY PENKSCDGLE NAVKRYREIV PHLKLSGPTS FAPVIDAAIN IVEQNNMQYH VLVIIADGQV TRNPDVPLGR LSPQEEATMN SIMAASHYPL
201: SIVLVGVGDG PWDTMKQFDD NIPHREFDNF QFVNFTKIMS EHKDAAKKEA AFALAALMEI PFQYKATLSL NRKPVRSSHQ HHKPLPPPPE VIERDNAVRS
301: VPNQMTETAE KSDRLAPSTV PVCPICLTNP KDMAFSCGHT TCKECGVVIT TCPLCRQPIT TRIRLYT

Arabidopsis Description

RGLG3E3 ubiquitin-protein ligase RGLG3 [Source:UniProtKB/Swiss-Prot;Acc:Q8RX26]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.