Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G111900.1 | Wheat | cytosol | 42.22 | 97.93 |
| TraesCS5D01G122000.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 93.2 | 97.02 |
| HORVU5Hr1G039100.3 | Barley | endoplasmic reticulum, extracellular, golgi | 90.52 | 93.88 |
| Os12t0288400-01 | Rice | endoplasmic reticulum, extracellular, vacuole | 77.46 | 79.3 |
| Zm00001d041073_P001 | Maize | endoplasmic reticulum, golgi, vacuole | 73.17 | 75.6 |
| OQU79014 | Sorghum | plastid | 65.3 | 69.0 |
| CDY27584 | Canola | cytosol | 26.48 | 63.79 |
| VIT_17s0000g09640.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 48.84 | 63.05 |
| VIT_01s0137g00460.t01 | Wine grape | nucleus | 49.37 | 62.44 |
| Bra032793.1-P | Field mustard | nucleus | 42.58 | 62.3 |
| KRH54288 | Soybean | cytosol, mitochondrion, nucleus, plastid | 47.59 | 62.15 |
| KRH63659 | Soybean | cytosol, mitochondrion, nucleus, plastid | 47.41 | 62.06 |
| Bra023465.1-P | Field mustard | cytosol, plastid | 49.73 | 61.64 |
| CDX85597 | Canola | cytosol, plastid | 49.73 | 61.64 |
| CDX84957 | Canola | cytosol | 42.4 | 61.56 |
| CDX91062 | Canola | cytosol, plastid | 49.2 | 60.84 |
| KRG94356 | Soybean | nucleus | 46.51 | 60.75 |
| GSMUA_Achr6P06710_001 | Banana | nucleus | 49.37 | 60.0 |
| VIT_14s0066g00290.t01 | Wine grape | mitochondrion | 49.02 | 59.44 |
| KRH43098 | Soybean | endoplasmic reticulum, golgi | 48.84 | 59.35 |
| Solyc03g111870.2.1 | Tomato | nucleus | 46.33 | 59.27 |
| Bra039105.1-P | Field mustard | nucleus | 48.3 | 59.21 |
| AT5G14420.2 | Thale cress | nucleus, plastid | 49.37 | 58.97 |
| Bra000997.1-P | Field mustard | nucleus | 48.3 | 58.95 |
| CDX91935 | Canola | cytosol | 48.12 | 58.86 |
| CDX74310 | Canola | cytosol | 48.12 | 58.73 |
| KRH59243 | Soybean | endoplasmic reticulum, golgi | 48.3 | 58.7 |
| CDY49066 | Canola | cytosol | 48.3 | 58.7 |
| CDY37509 | Canola | cytosol | 48.3 | 58.7 |
| CDX69581 | Canola | nucleus, plastid | 48.84 | 58.58 |
| Bra008758.1-P | Field mustard | nucleus | 48.84 | 58.58 |
| CDY09854 | Canola | nucleus, plastid | 48.66 | 58.37 |
| CDY56212 | Canola | plastid | 45.98 | 58.28 |
| Bra004260.1-P | Field mustard | plastid | 45.98 | 58.28 |
| CDX70564 | Canola | cytosol, plastid | 49.02 | 58.17 |
| CDY01855 | Canola | cytosol, plastid | 45.8 | 58.05 |
| Bra006253.1-P | Field mustard | nucleus, plastid | 48.84 | 57.96 |
| CDX78576 | Canola | cytosol, plastid | 48.84 | 57.96 |
| KRG97516 | Soybean | golgi, plasma membrane | 47.59 | 57.95 |
| AT1G67800.2 | Thale cress | plasma membrane | 46.69 | 57.62 |
| TraesCS3A01G414400.2 | Wheat | cytosol | 44.54 | 57.11 |
| KRH31355 | Soybean | golgi, plasma membrane | 47.23 | 57.02 |
| TraesCS7A01G381200.1 | Wheat | cytosol, plastid | 44.36 | 56.24 |
| AT3G01650.2 | Thale cress | cytosol | 49.02 | 56.03 |
| TraesCS3A01G503400.1 | Wheat | cytosol | 38.1 | 55.76 |
| Solyc02g093520.2.1 | Tomato | nucleus | 49.02 | 55.69 |
| TraesCS7A01G381300.1 | Wheat | plastid | 45.44 | 55.58 |
| KRH58251 | Soybean | nucleus | 48.66 | 55.4 |
| TraesCS7A01G308900.1 | Wheat | mitochondrion | 39.53 | 55.11 |
| KRG93947 | Soybean | nucleus | 48.84 | 55.04 |
| PGSC0003DMT400032842 | Potato | mitochondrion | 47.05 | 54.12 |
| TraesCS5A01G368900.1 | Wheat | endoplasmic reticulum, extracellular | 29.7 | 52.53 |
| CDY27585 | Canola | cytosol | 10.91 | 46.92 |
| KRG95016 | Soybean | nucleus, peroxisome, plasma membrane | 29.16 | 45.03 |
| AT1G24545.1 | Thale cress | cytosol | 13.95 | 42.86 |
| TraesCS3A01G503300.1 | Wheat | cytosol | 35.42 | 41.42 |
| PGSC0003DMT400039186 | Potato | cytosol | 45.98 | 26.77 |
| TraesCS6A01G189800.1 | Wheat | cytosol | 16.64 | 16.2 |
| TraesCS1A01G236100.4 | Wheat | cytosol | 16.28 | 15.42 |
| TraesCS6A01G058200.2 | Wheat | cytosol, plastid | 17.17 | 15.17 |
| TraesCS7A01G414000.1 | Wheat | cytosol | 15.03 | 14.29 |
Protein Annotations
| MapMan:19.2.2.1.5.3.2 | MapMan:19.2.2.1.6.2 | Gene3D:3.30.40.10 | InterPro:Copine | InterPro:IPR001841 | InterPro:IPR002035 |
| InterPro:IPR013083 | InterPro:IPR036465 | PFAM:PF07002 | PFAM:PF13920 | PFscan:PS50089 | PANTHER:PTHR10857 |
| PANTHER:PTHR10857:SF68 | SMART:SM00327 | SUPFAM:SSF53300 | SUPFAM:SSF57850 | SignalP:SignalP-TM | TMHMM:TMhelix |
| EnsemblPlantsGene:TraesCS5A01G103800 | EnsemblPlants:TraesCS5A01G103800.2 | InterPro:VWF_A | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | TIGR:cd16729 |
| SEG:seg | InterPro:vWFA_dom_sf | : | : | : | : |
Description
No Description!
Coordinates
chr5A:+:164135377..164159961
Molecular Weight (calculated)
60740.2 Da
IEP (calculated)
6.671
GRAVY (calculated)
-0.231
Length
559 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGFLAVAGK IVTLLLWVLF LILQTATKVV GGLLQVAPPA EPQEEPQPEA APRPRSPPAA RNSAGGGPAD PYDPRSQPWD PPPPPHTAPV TDEYHSSSIY
101: RRRVSAPQAA EDLVVSSSSY SRSAVAAVPA SPAHAVPAPP VSRTIKTPAV ASKRPKLERK YSKIVDQYRS LDEVIEALAQ AGLESSNLII GIDFTKSNEW
201: TGKRSFSGVS LHHIGDAPNP YEQAISIIGQ TLSAFDEDNL IPCYGFGDAS THDQDVFAFN PDERPCYGFQ EALARYRQIV PHLRLSGPTS FSPIIEMATT
301: IVEQSGGQYH VLVIIADGQV TRSVNTKFGQ LSTQEQMTVD AIVQASEFPL SIILVGVGDG PWDMMNEFDD NIPARSFDNF QFVNFTGIMS KKISQSIKET
401: EFALSALMEI PLQYKATLQL GILGRRLAKS PERVPLPPPF ASYNTTSRAA PSWENNFRSV PSNLREEATL DSTITPSVTP PPAADARASE LQVLPPRSTV
501: ITLTKNRIRA SNHQFCPVCL AKPRDMAFGC GHQTCSGCGP QVADCPICRR PIDTRVKLY
101: RRRVSAPQAA EDLVVSSSSY SRSAVAAVPA SPAHAVPAPP VSRTIKTPAV ASKRPKLERK YSKIVDQYRS LDEVIEALAQ AGLESSNLII GIDFTKSNEW
201: TGKRSFSGVS LHHIGDAPNP YEQAISIIGQ TLSAFDEDNL IPCYGFGDAS THDQDVFAFN PDERPCYGFQ EALARYRQIV PHLRLSGPTS FSPIIEMATT
301: IVEQSGGQYH VLVIIADGQV TRSVNTKFGQ LSTQEQMTVD AIVQASEFPL SIILVGVGDG PWDMMNEFDD NIPARSFDNF QFVNFTGIMS KKISQSIKET
401: EFALSALMEI PLQYKATLQL GILGRRLAKS PERVPLPPPF ASYNTTSRAA PSWENNFRSV PSNLREEATL DSTITPSVTP PPAADARASE LQVLPPRSTV
501: ITLTKNRIRA SNHQFCPVCL AKPRDMAFGC GHQTCSGCGP QVADCPICRR PIDTRVKLY
001: MGTGNSKENW RQSSFRSTSA SSASPSSSSW ASQQSYPQYG AESYNYPPPP SYAQPPEYTQ PPPPLYSTQP YSAPSYSAPP SQSYGSDNKK RLERKYSKIS
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY
Arabidopsis Description
RGLG2E3 ubiquitin-protein ligase RGLG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY87]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.