CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07106	Soybean	cytosol, plastid	63.08	92.78
KRH07102	Soybean	cytosol	29.44	90.0
KRH58251	Soybean	nucleus	80.14	69.86
KRG95016	Soybean	nucleus, peroxisome, plasma membrane	58.41	69.06
KRG93947	Soybean	nucleus	79.67	68.75
VIT_14s0066g00290.t01	Wine grape	mitochondrion	70.79	65.73
KRH63659	Soybean	cytosol, mitochondrion, nucleus, plastid	65.42	65.57
KRH54288	Soybean	cytosol, mitochondrion, nucleus, plastid	64.95	64.95
Bra023465.1-P	Field mustard	cytosol, plastid	67.52	64.08
CDX85597	Canola	cytosol, plastid	67.52	64.08
CDX91062	Canola	cytosol, plastid	67.52	63.94
CDX91935	Canola	cytosol	67.99	63.68
Bra000997.1-P	Field mustard	nucleus	67.99	63.54
Bra039105.1-P	Field mustard	nucleus	67.52	63.38
CDX74310	Canola	cytosol	67.76	63.32
CDY37509	Canola	cytosol	67.99	63.26
CDY49066	Canola	cytosol	67.99	63.26
CDY09854	Canola	nucleus, plastid	68.69	63.09
CDX69581	Canola	nucleus, plastid	68.69	63.09
Bra008758.1-P	Field mustard	nucleus	68.46	62.88
KRH43661	Soybean	cytosol	49.07	62.5
CDX70564	Canola	cytosol, plastid	68.69	62.42
Bra006253.1-P	Field mustard	nucleus, plastid	68.46	62.21
Os01t0908700-01	Rice	plasma membrane, plastid	64.72	62.11
Zm00001d048784_P001	Maize	cytosol	44.63	62.01
CDX78576	Canola	cytosol, plastid	68.22	62.0
GSMUA_Achr8P01300_001	Banana	nucleus	62.85	61.98
KRH43098	Soybean	endoplasmic reticulum, golgi	66.59	61.96
Solyc02g093520.2.1	Tomato	nucleus	70.56	61.38
EES04073	Sorghum	nucleus	65.65	61.22
KRH59243	Soybean	endoplasmic reticulum, golgi	65.65	61.09
TraesCS3B01G449200.1	Wheat	cytosol	66.59	61.03
GSMUA_Achr9P29460_001	Banana	nucleus	66.59	60.9
TraesCS3D01G408900.1	Wheat	cytosol	66.12	60.73
KRG97516	Soybean	golgi, plasma membrane	64.95	60.57
Zm00001d042437_P005	Maize	cytosol	66.12	59.96
TraesCS5B01G111900.1	Wheat	cytosol	33.41	59.34
KRH31355	Soybean	golgi, plasma membrane	64.02	59.18
PGSC0003DMT400032842	Potato	mitochondrion	66.82	58.85
GSMUA_Achr6P06710_001	Banana	nucleus	62.85	58.48
KRH59596	Soybean	nucleus	56.78	57.04
TraesCS3A01G414400.2	Wheat	cytosol	57.48	56.42
Zm00001d012101_P002	Maize	mitochondrion	65.65	55.31
KRH64018	Soybean	nucleus	55.14	54.63
KRH13149	Soybean	cytosol, plastid	50.93	52.28
KRH44829	Soybean	nucleus, plastid	50.7	51.06
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	62.62	49.54
KRH40948	Soybean	nucleus	41.12	49.3
Os12t0288400-01	Rice	endoplasmic reticulum, extracellular, vacuole	62.38	48.9
TraesCS5D01G122000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	61.22	48.79
HORVU5Hr1G039100.3	Barley	endoplasmic reticulum, extracellular, golgi	61.22	48.61
HORVU3Hr1G092250.6	Barley	plastid	62.15	47.93
AT1G24545.1	Thale cress	cytosol	20.09	47.25
TraesCS5A01G103800.2	Wheat	endoplasmic reticulum, extracellular, golgi	60.75	46.51
OQU79014	Sorghum	plastid	55.61	44.99
KRH53919	Soybean	nucleus	38.32	43.73
KRH20017	Soybean	cytosol	17.76	27.84
KRH54085	Soybean	cytosol	24.3	17.99
KRH41052	Soybean	endoplasmic reticulum	23.83	17.59
KRH68625	Soybean	cytosol	24.07	17.43
KRG96891	Soybean	cytosol	23.83	17.17
KRH68626	Soybean	cytosol	23.13	17.07
KRH63871	Soybean	cytosol	24.3	16.72
KRH13085	Soybean	extracellular, vacuole	17.52	14.37
KRH44837	Soybean	extracellular, golgi	16.82	13.95
KRH13151	Soybean	nucleus, vacuole	16.82	13.48
KRH44834	Soybean	plasma membrane	14.25	12.45

Protein Annotations

EntrezGene:100787033	MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	EMBL:ACUP02011936	InterPro:Copine
EnsemblPlantsGene:GLYMA_19G078600	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	UniProt:K7MX57
ProteinID:KRG94353.1	ProteinID:KRG94354.1	ProteinID:KRG94355.1	EnsemblPlants:KRG94356	ProteinID:KRG94356	ProteinID:KRG94356.1
ProteinID:KRG94357.1	PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF28
SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI000233EBD3	InterPro:VWF_A
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

hypothetical protein

Coordinates

chr19:-:28159556..28165974

Molecular Weight (calculated)

47118.2 Da

IEP (calculated)

6.088

GRAVY (calculated)

-0.397

Length

428 amino acids

Sequence
(BLAST)

001: MGGQNSKEES WRQSSSVRSS SSSWSAYLDP LSSYGFNEPQ PSYSSYGYEA YGGDGMVRYD STKLERRYSR ISDHYSSIDQ VSEALALAGL ESSNLIVGVD
101: FTKSNEWTGK NSFNRRSLHH IGRGLNPYEQ AISIIGKSLA AFDEDNLIPC FGFGDASTHD QDVFSFYPSE RFCDGFEDVL SRYREIVPHL RLAGPTSFAP
201: IIEMAMSIVE QSGGQYHVLV IIADGQVTKN VDTKHGRPSP QEQKTVDAIV AASKFPLSII LVGVGDGPWD MMKEFDDNIP ARAFDNFQFV NFTEIMSKSI
301: PPSRKEAAFA LAALMEIPSQ YKAAIELKLL GSRQANAPQR HALPPPRYSS HAARFEPSIP PQHGNSHPFA TAPSAPSSTS DNQLCPICLS NAKDMAFGCG
401: HQTCCECGQD LQSCPMCRSP INTRIKLY

Best Arabidopsis Sequence Match ( AT3G01650.1 )
(BLAST)

001: MGGGNSKEES SSPSSSSWAS HQSYPQYGPD SYNYPPPPTY APAPSPAPAP APVPAPSPAS SYGPQYSQEG YASQPNNPPP PTYAPAPSPA SSYGHQYSQE
101: GYASAASQPN YPPPPSQSQV ADRKKFDRRY SKISDNYSSL LQVSEALGRA GLESSNLIVG IDFTKSNEWT GAKSFNRKSL HHLSNTPNPY EQAITIIGRT
201: LAAFDEDNLI PCYGFGDAST HDQDVFSFYP EGRFCNGFEE VLARYREIVP QLKLAGPTSF APIIEMAMTV VEQSSGQYHV LVIIADGQVT RSVDTEHGRL
301: SPQEQKTVDA IVKASTLPLS IVLVGVGDGP WDMMQEFDDN IPARAFDNFQ FVNFTEIMSK NKDQSRKETE FALSALMEIP PQYKATIELN LLGVRNGNIP
401: QRIPLPPPVQ SGSSFSSSRI PNFEPSVPPY PFESKQMSSA DDIQLCPICL SNPKNMAFGC GHQTCCECGP DLKVCPICRA PIQTRIKLY

Arabidopsis Description

RGLG1E3 ubiquitin-protein ligase RGLG1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.