CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44829	Soybean	nucleus, plastid	94.24	92.47
KRH43661	Soybean	cytosol	64.75	80.36
CDX67997	Canola	cytosol	62.83	69.31
CDX79314	Canola	cytosol, plastid	62.35	68.6
VIT_19s0085g01000.t01	Wine grape	extracellular	62.83	68.05
CDX88533	Canola	plastid	63.07	65.26
CDX87387	Canola	plastid	62.83	65.17
Bra035112.1-P	Field mustard	plastid	62.59	64.93
AT1G79380.1	Thale cress	mitochondrion	62.11	64.59
CDX99619	Canola	cytosol	10.31	63.24
Os08t0135400-01	Rice	plasma membrane	60.43	62.84
GSMUA_Achr7P03440_001	Banana	cytosol	46.76	62.3
Zm00001d035211_P001	Maize	mitochondrion	58.99	60.89
CDY50776	Canola	cytosol	10.79	60.81
TraesCS7A01G308900.1	Wheat	mitochondrion	58.03	60.35
GSMUA_AchrUn_...	Banana	mitochondrion	60.19	60.34
EES13310	Sorghum	mitochondrion	58.51	59.8
Solyc05g053870.2.1	Tomato	plastid	64.27	59.42
TraesCS7D01G305600.1	Wheat	mitochondrion	57.31	58.87
TraesCS7B01G208900.1	Wheat	mitochondrion	55.64	55.24
PGSC0003DMT400040712	Potato	nucleus, plastid	64.03	55.17
KRH63659	Soybean	cytosol, mitochondrion, nucleus, plastid	54.92	53.63
KRH07106	Soybean	cytosol, plastid	36.69	52.58
KRH54288	Soybean	cytosol, mitochondrion, nucleus, plastid	53.72	52.34
KRH64018	Soybean	nucleus	53.48	51.62
KRH59596	Soybean	nucleus	52.28	51.17
KRG94356	Soybean	nucleus	52.28	50.93
KRH43098	Soybean	endoplasmic reticulum, golgi	54.92	49.78
KRH59243	Soybean	endoplasmic reticulum, golgi	54.92	49.78
KRH58251	Soybean	nucleus	57.07	48.47
KRG97516	Soybean	golgi, plasma membrane	53.0	48.15
KRH31355	Soybean	golgi, plasma membrane	53.0	47.73
KRH07102	Soybean	cytosol	15.83	47.14
KRG93947	Soybean	nucleus	55.88	46.98
KRH40948	Soybean	nucleus	37.89	44.26
KRH53919	Soybean	nucleus	35.73	39.73
KRG95016	Soybean	nucleus, peroxisome, plasma membrane	33.09	38.12
KRH20017	Soybean	cytosol	15.83	24.18
KRH54085	Soybean	cytosol	20.62	14.88
KRH41052	Soybean	endoplasmic reticulum	20.38	14.66
KRH68626	Soybean	cytosol	20.14	14.48
KRH68625	Soybean	cytosol	19.66	13.87
KRH13085	Soybean	extracellular, vacuole	17.27	13.79
KRH63871	Soybean	cytosol	20.38	13.67
KRG96891	Soybean	cytosol	19.42	13.64
KRH44837	Soybean	extracellular, golgi	16.79	13.57
KRH13151	Soybean	nucleus, vacuole	16.55	12.92
KRH44834	Soybean	plasma membrane	14.63	12.45

Protein Annotations

EntrezGene:100803177	MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	Gene3D:3.40.50.410	UniProt:A0A0R0G4C4
EMBL:ACUP02009566	InterPro:Copine	EnsemblPlantsGene:GLYMA_15G219300	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083
InterPro:IPR036465	EnsemblPlants:KRH13149	ProteinID:KRH13149	ProteinID:KRH13149.1	PFAM:PF07002	PFAM:PF13920
PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF47	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300
SUPFAM:SSF57850	UniParc:UPI000233B5DE	InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg
InterPro:vWFA_dom_sf	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:+:38021459..38033633

Molecular Weight (calculated)

45410.0 Da

IEP (calculated)

6.704

GRAVY (calculated)

-0.307

Length

417 amino acids

Sequence
(BLAST)

001: MGNSHAKKRD TQFSRNVVEG RVPSPKNKTL SPSPSLEPPL PREPPPAAAM SLNKGSGKLS AKEKYALIPD NFTTLEQVTI ALRKEGLESS NLVLGIDFTK
101: SNEWTGSVSF NNRSLHAIGS TPNPYEKAIS IIGKTLAPFD DDNLIPCFGF GDATTHDQEV FSFHSDNSPC HGFEEVLACY QKIVPNLRLS GPTSYAPVIE
201: AAIDIVEKSH GQFHVLVIVA DGQVTTSAAS EDGELSPQEA RTIKAIADAS SYPLSIILVG VGDGPWEDMK KFDDKIPARD FDNFQFVNFT DIMAKKSSPS
301: EKEAAFALAA LMEIPFQYKA ATELGLLGRA TGRSNKIVPR PPPAPYSQLV PPARVLSNTP TFMDDERNQM ACAICLTNKK DLAFGCGHMT CRDCGSRLTD
401: CPICRQRITN RLRVFSS

Best Arabidopsis Sequence Match ( AT1G79380.1 )
(BLAST)

001: MTMGNFLKRF GSGKSRSSRN MTLGTTSSQS HEPSPSDPSL SLADNTNATK KKYALIPDRF SSLDQVSKAL REAGLESSNL ILGVDFTKSN EWTGKTSFDG
101: KCLHALGETS NPYEKAIFVI GQTLAPFDED NLIPCFGFGD STTHDEEVFG FHSDNSPCHG FEEVLACYKR IAPNLRLSGP TSYGPLIDAA VDIVEKNNGQ
201: FHVLVIVADG QVTRGTDMAE GELSQQEKTT IDAIVNASSY ALSIVLVGVG DGPWEDMRKF DDKIPKREFD NFQFVNFTEI MTRNSPESAK ETAFALAALM
301: EIPFQYQAAI ELRLLGKQTG LAKTIVPRPP PIPYTPPTNA ELPSTASPAS PEQTQSCPIC LTNRKDVAFS CGHMTCGDCG SKISNCPICR VRITNRLKLY
401: T

Arabidopsis Description

RGLG4E3 ubiquitin-protein ligase RGLG4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAL0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.