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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 3
  • mitochondrion 6
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX88533 Canola plastid 85.79 85.36
Bra035112.1-P Field mustard plastid 85.29 85.07
CDX87387 Canola plastid 84.79 84.58
KRH43661 Soybean cytosol 58.6 69.94
KRH44829 Soybean nucleus, plastid 65.84 62.12
KRH13149 Soybean cytosol, plastid 64.59 62.11
VIT_19s0085g01000.t01 Wine grape extracellular 59.6 62.08
TraesCS7A01G308900.1 Wheat mitochondrion 60.35 60.35
GSMUA_Achr7P03440_001 Banana cytosol 46.38 59.42
TraesCS7D01G305600.1 Wheat mitochondrion 60.1 59.36
Os08t0135400-01 Rice plasma membrane 59.1 59.1
GSMUA_AchrUn_... Banana mitochondrion 60.85 58.65
EES13310 Sorghum mitochondrion 58.35 57.35
Zm00001d035211_P001 Maize mitochondrion 57.61 57.18
AT5G63970.1 Thale cress cytosol 52.12 56.95
Solyc05g053870.2.1 Tomato plastid 63.09 56.1
TraesCS7B01G208900.1 Wheat mitochondrion 57.86 55.24
PGSC0003DMT400040712 Potato nucleus, plastid 64.59 53.51
AT5G14420.2 Thale cress nucleus, plastid 54.86 47.01
AT1G67800.2 Thale cress plasma membrane 52.62 46.58
AT3G01650.2 Thale cress cytosol 52.87 43.35
AT1G24545.1 Thale cress cytosol 16.21 35.71
AT5G61900.3 Thale cress cytosol 20.2 14.01
AT5G07300.1 Thale cress cytosol 20.45 13.99
AT1G08860.1 Thale cress cytosol 19.7 13.53
AT5G61910.4 Thale cress cytosol 20.2 6.02
Protein Annotations
MapMan:19.2.2.1.5.3.2MapMan:19.2.2.1.6.2Gene3D:3.30.40.10EntrezGene:844276ProteinID:AAD30238.1ProteinID:AEE36236.1
EMBL:AF372928ArrayExpress:AT1G79380EnsemblPlantsGene:AT1G79380RefSeq:AT1G79380TAIR:AT1G79380RefSeq:AT1G79380-TAIR-G
EnsemblPlants:AT1G79380.1TAIR:AT1G79380.1EMBL:AY133585Unigene:At.48394InterPro:CopineGO:GO:0003674
GO:GO:0003824GO:GO:0004842GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0006464GO:GO:0006950GO:GO:0007154
GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009605GO:GO:0009607GO:GO:0009611
GO:GO:0009719GO:GO:0009867GO:GO:0009987GO:GO:0016567GO:GO:0016740GO:GO:0019538
GO:GO:0042742GO:GO:0046872InterPro:IPR001841InterPro:IPR002035InterPro:IPR013083InterPro:IPR036465
RefSeq:NP_565206.1PFAM:PF07002PFAM:PF13920PO:PO:0000013PO:PO:0000037PO:PO:0000084
PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185
PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115
PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006
PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031
PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038
PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025281PFscan:PS50089PANTHER:PTHR10857
PANTHER:PTHR10857:SF47UniProt:Q9SAL0SMART:SM00184SMART:SM00327SUPFAM:SSF53300SUPFAM:SSF57850
UniParc:UPI00000A2554InterPro:VWF_AInterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDSEG:segInterPro:vWFA_dom_sf
Description
RGLG4E3 ubiquitin-protein ligase RGLG4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAL0]
Coordinates
chr1:+:29860491..29863316
Molecular Weight (calculated)
43732.7 Da
IEP (calculated)
5.468
GRAVY (calculated)
-0.320
Length
401 amino acids
Sequence
(BLAST)
001: MTMGNFLKRF GSGKSRSSRN MTLGTTSSQS HEPSPSDPSL SLADNTNATK KKYALIPDRF SSLDQVSKAL REAGLESSNL ILGVDFTKSN EWTGKTSFDG
101: KCLHALGETS NPYEKAIFVI GQTLAPFDED NLIPCFGFGD STTHDEEVFG FHSDNSPCHG FEEVLACYKR IAPNLRLSGP TSYGPLIDAA VDIVEKNNGQ
201: FHVLVIVADG QVTRGTDMAE GELSQQEKTT IDAIVNASSY ALSIVLVGVG DGPWEDMRKF DDKIPKREFD NFQFVNFTEI MTRNSPESAK ETAFALAALM
301: EIPFQYQAAI ELRLLGKQTG LAKTIVPRPP PIPYTPPTNA ELPSTASPAS PEQTQSCPIC LTNRKDVAFS CGHMTCGDCG SKISNCPICR VRITNRLKLY
401: T
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.