Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84471 | Canola | cytosol, mitochondrion | 90.74 | 91.74 |
| CDY43775 | Canola | cytosol, mitochondrion | 91.01 | 91.01 |
| Bra024254.1-P | Field mustard | mitochondrion | 90.74 | 90.98 |
| CDY31343 | Canola | cytosol | 90.46 | 90.46 |
| Bra031942.1-P | Field mustard | cytosol, mitochondrion, nucleus | 83.65 | 89.77 |
| CDY39835 | Canola | cytosol | 89.37 | 89.37 |
| VIT_04s0044g01620.t01 | Wine grape | cytosol | 66.21 | 66.21 |
| GSMUA_Achr10P... | Banana | nucleus | 66.48 | 63.87 |
| Solyc09g065870.2.1 | Tomato | nucleus | 71.39 | 62.38 |
| KRH59596 | Soybean | nucleus | 71.66 | 61.74 |
| TraesCS3A01G503400.1 | Wheat | cytosol | 64.03 | 61.52 |
| TraesCS3D01G510000.1 | Wheat | cytosol | 57.49 | 61.34 |
| TraesCS3B01G566800.1 | Wheat | cytosol | 62.94 | 60.95 |
| GSMUA_Achr5P25930_001 | Banana | extracellular | 39.24 | 60.76 |
| KXG34172 | Sorghum | nucleus | 64.03 | 60.72 |
| KRH64018 | Soybean | nucleus | 70.84 | 60.19 |
| Os01t0960500-01 | Rice | plasma membrane | 63.22 | 59.95 |
| Zm00001d006136_P001 | Maize | cytosol | 14.71 | 55.67 |
| Zm00001d011821_P007 | Maize | cytosol | 61.58 | 52.68 |
| AT1G79380.1 | Thale cress | mitochondrion | 56.95 | 52.12 |
| GSMUA_Achr5P25940_001 | Banana | cytosol | 30.52 | 51.61 |
| KRH40948 | Soybean | nucleus | 47.96 | 49.3 |
| AT5G14420.2 | Thale cress | nucleus, plastid | 59.13 | 46.37 |
| HORVU3Hr1G110870.14 | Barley | mitochondrion | 59.95 | 46.12 |
| AT1G67800.2 | Thale cress | plasma membrane | 56.68 | 45.92 |
| HORVU3Hr1G110850.8 | Barley | cytosol | 42.23 | 44.54 |
| KRH53919 | Soybean | nucleus | 45.23 | 44.27 |
| AT3G01650.2 | Thale cress | cytosol | 58.58 | 43.97 |
| TraesCS3A01G503300.1 | Wheat | cytosol | 56.4 | 43.31 |
| TraesCS3D01G509900.2 | Wheat | cytosol | 56.4 | 43.22 |
| TraesCS3B01G566700.1 | Wheat | cytosol | 55.31 | 41.77 |
| AT1G24545.1 | Thale cress | cytosol | 18.8 | 37.91 |
| AT5G61900.3 | Thale cress | cytosol | 22.07 | 14.01 |
| AT5G07300.1 | Thale cress | cytosol | 22.34 | 13.99 |
| AT1G08860.1 | Thale cress | cytosol | 20.71 | 13.01 |
| AT5G61910.4 | Thale cress | cytosol | 22.07 | 6.02 |
Protein Annotations
| MapMan:19.2.2.1.5.3.2 | MapMan:19.2.2.1.6.2 | Gene3D:3.30.40.10 | EntrezGene:836518 | UniProt:A0A178U7R6 | ProteinID:AED97823.1 |
| ProteinID:AED97824.1 | ArrayExpress:AT5G63970 | EnsemblPlantsGene:AT5G63970 | RefSeq:AT5G63970 | TAIR:AT5G63970 | RefSeq:AT5G63970-TAIR-G |
| EnsemblPlants:AT5G63970.1 | TAIR:AT5G63970.1 | EMBL:AY090939 | EMBL:AY123020 | Unigene:At.28971 | ProteinID:BAA96900.1 |
| InterPro:Copine | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006464 |
| GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009605 |
| GO:GO:0009607 | GO:GO:0009611 | GO:GO:0009719 | GO:GO:0009867 | GO:GO:0009987 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0042742 | GO:GO:0046872 | InterPro:IPR001841 | InterPro:IPR002035 |
| InterPro:IPR013083 | InterPro:IPR036465 | RefSeq:NP_001032132.1 | RefSeq:NP_201202.2 | ProteinID:OAO89670.1 | PFAM:PF07002 |
| PFAM:PF13920 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001185 | PO:PO:0007095 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 |
| PO:PO:0009009 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50089 | PANTHER:PTHR10857 | PANTHER:PTHR10857:SF98 | UniProt:Q8RX26 |
| SMART:SM00327 | SUPFAM:SSF53300 | SUPFAM:SSF57850 | UniParc:UPI00000A0E65 | InterPro:VWF_A | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | InterPro:vWFA_dom_sf | : | : | : |
Description
RGLG3E3 ubiquitin-protein ligase RGLG3 [Source:UniProtKB/Swiss-Prot;Acc:Q8RX26]
Coordinates
chr5:-:25606771..25609306
Molecular Weight (calculated)
41191.2 Da
IEP (calculated)
7.071
GRAVY (calculated)
-0.373
Length
367 amino acids
Sequence
(BLAST)
(BLAST)
001: MNMSNKRNQQ PSYIADHFSS LDQVITSLRE AGLESSNLIL GIDFTKSNEW TGRYSFNRKS LHAIGKRQNP YEKAISIIGR TLSPFDEDDL IPCFGFGDVT
101: TRDQYVFSFY PENKSCDGLE NAVKRYREIV PHLKLSGPTS FAPVIDAAIN IVEQNNMQYH VLVIIADGQV TRNPDVPLGR LSPQEEATMN SIMAASHYPL
201: SIVLVGVGDG PWDTMKQFDD NIPHREFDNF QFVNFTKIMS EHKDAAKKEA AFALAALMEI PFQYKATLSL NRKPVRSSHQ HHKPLPPPPE VIERDNAVRS
301: VPNQMTETAE KSDRLAPSTV PVCPICLTNP KDMAFSCGHT TCKECGVVIT TCPLCRQPIT TRIRLYT
101: TRDQYVFSFY PENKSCDGLE NAVKRYREIV PHLKLSGPTS FAPVIDAAIN IVEQNNMQYH VLVIIADGQV TRNPDVPLGR LSPQEEATMN SIMAASHYPL
201: SIVLVGVGDG PWDTMKQFDD NIPHREFDNF QFVNFTKIMS EHKDAAKKEA AFALAALMEI PFQYKATLSL NRKPVRSSHQ HHKPLPPPPE VIERDNAVRS
301: VPNQMTETAE KSDRLAPSTV PVCPICLTNP KDMAFSCGHT TCKECGVVIT TCPLCRQPIT TRIRLYT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.