CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024254.1-P	Field mustard	mitochondrion	99.45	99.73
CDX84471	Canola	cytosol, mitochondrion	98.37	99.45
CDY31343	Canola	cytosol	91.55	91.55
AT5G63970.1	Thale cress	cytosol	91.01	91.01
CDY39835	Canola	cytosol	90.74	90.74
VIT_04s0044g01620.t01	Wine grape	cytosol	66.76	66.76
GSMUA_Achr10P...	Banana	nucleus	66.48	63.87
TraesCS3A01G503400.1	Wheat	cytosol	64.85	62.3
Solyc09g065870.2.1	Tomato	nucleus	71.12	62.14
TraesCS3D01G510000.1	Wheat	cytosol	58.04	61.92
KXG34172	Sorghum	nucleus	65.12	61.76
TraesCS3B01G566800.1	Wheat	cytosol	63.49	61.48
Os01t0960500-01	Rice	plasma membrane	64.31	60.98
KRH59596	Soybean	nucleus	70.57	60.8
GSMUA_Achr5P25930_001	Banana	extracellular	39.24	60.76
KRH64018	Soybean	nucleus	71.12	60.42
CDX99619	Canola	cytosol	10.63	57.35
CDY50776	Canola	cytosol	11.44	56.76
CDX84957	Canola	cytosol	58.04	55.32
CDX67997	Canola	cytosol	56.68	55.03
CDX79314	Canola	cytosol, plastid	56.68	54.88
Zm00001d006136_P001	Maize	cytosol	14.44	54.64
Zm00001d011821_P007	Maize	cytosol	62.67	53.61
GSMUA_Achr5P25940_001	Banana	cytosol	31.34	53.0
CDY27584	Canola	cytosol	33.24	52.59
CDX88533	Canola	plastid	56.68	51.61
CDX87387	Canola	plastid	55.86	50.99
CDX85597	Canola	cytosol, plastid	60.49	49.22
CDX91062	Canola	cytosol, plastid	60.49	49.12
KRH40948	Soybean	nucleus	47.68	49.02
CDY37509	Canola	cytosol	61.04	48.7
CDY49066	Canola	cytosol	61.04	48.7
CDX74310	Canola	cytosol	60.49	48.47
CDX91935	Canola	cytosol	60.22	48.36
CDY01855	Canola	cytosol, plastid	58.04	48.3
CDY56212	Canola	plastid	57.77	48.07
CDY09854	Canola	nucleus, plastid	59.95	47.21
CDX69581	Canola	nucleus, plastid	59.67	47.0
CDX70564	Canola	cytosol, plastid	60.22	46.92
HORVU3Hr1G110870.14	Barley	mitochondrion	60.76	46.75
CDX78576	Canola	cytosol, plastid	59.95	46.71
KRH53919	Soybean	nucleus	46.87	45.87
HORVU3Hr1G110850.8	Barley	cytosol	42.51	44.83
CDY49067	Canola	extracellular	17.98	44.0
TraesCS3A01G503300.1	Wheat	cytosol	56.4	43.31
TraesCS3D01G509900.2	Wheat	cytosol	56.4	43.22
CDY27585	Canola	cytosol	14.99	42.31
TraesCS3B01G566700.1	Wheat	cytosol	55.31	41.77
CDX85680	Canola	mitochondrion, plastid	12.26	30.61
CDY52873	Canola	plastid	23.98	28.76
CDX72278	Canola	plastid	26.7	26.42
CDY03984	Canola	cytosol	20.71	25.59
CDX98983	Canola	cytosol, plastid	16.89	25.31
CDY25816	Canola	cytosol	2.45	18.37
CDX98984	Canola	cytosol	22.34	13.97
CDX70026	Canola	cytosol	22.34	13.92
CDX78287	Canola	cytosol	21.53	13.46
CDY00235	Canola	cytosol	21.25	13.45
CDX81044	Canola	cytosol	21.25	13.29
CDX86951	Canola	cytosol	20.71	13.1
CDY06335	Canola	cytosol	19.89	12.52
CDY22660	Canola	cytosol	19.62	12.39

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	GO:A0A078HYW0	UniProt:A0A078HYW0	EnsemblPlants:CDY43775
ProteinID:CDY43775	ProteinID:CDY43775.1	InterPro:Copine	EnsemblPlantsGene:GSBRNA2T00077275001	InterPro:IPR001841	InterPro:IPR002035
InterPro:IPR013083	InterPro:IPR036465	PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857
PANTHER:PTHR10857:SF98	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0004EF0B1A
InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:

Description

BnaA06g23110DBnaA06g23110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HYW0]

Coordinates

chrLK032568:-:86075..87989

Molecular Weight (calculated)

41366.4 Da

IEP (calculated)

7.313

GRAVY (calculated)

-0.381

Length

367 amino acids

Sequence
(BLAST)

001: MNRYNQRNQQ PSFIADHFHS LDQVITSLRE AGLESSNLIL GIDFTKSNEW TGRHSFSRKS LHAIGKRQNP YEQAISIIGR TLSPFDEDDL IPCFGFGDVT
101: TRDQYVFSFY PENKSCDGFE NAVKRYREIV PHLKLSGPTS FAPIINAAID IVEQNNMQYH VLVIIADGQV TRNPDLPFGR LSPQEEATMN SIVAASHYPL
201: SIVLVGVGDG PWDTMKQFDD NIPHRKFDNF QFVNFTEIMS EHKDAAKKEA AFALAALMEI PFQYKATLSL DRKQVRASRL HHKPLPPPPE VIERDNAVRA
301: VPNPVTETAE KSERTAPVTQ PVCPICLTKP KDMAFSCGHT TCKECGVVVK TCPMCRQPIT TRIRLYT

Best Arabidopsis Sequence Match ( AT5G63970.2 )
(BLAST)

001: MNMSNKRNQQ PSYIADHFSS LDQVITSLRE AGLESSNLIL GIDFTKSNEW TGRYSFNRKS LHAIGKRQNP YEKAISIIGR TLSPFDEDDL IPCFGFGDVT
101: TRDQYVFSFY PENKSCDGLE NAVKRYREIV PHLKLSGPTS FAPVIDAAIN IVEQNNMQYH VLVIIADGQV TRNPDVPLGR LSPQEEATMN SIMAASHYPL
201: SIVLVGVGDG PWDTMKQFDD NIPHREFDNF QFVNFTKIMS EHKDAAKKEA AFALAALMEI PFQYKATLSL NRKPVRSSHQ HHKPLPPPPE VIERDNAVRS
301: VPNQMTETAE KSDRLAPSTV PVCPICLTNP KDMAFSCGHT TCKECGVVIT TCPLCRQPIT TRIRLYT

Arabidopsis Description

RGLG3E3 ubiquitin-protein ligase RGLG3 [Source:UniProtKB/Swiss-Prot;Acc:Q8RX26]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.