Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX72278 | Canola | plastid | 95.42 | 78.71 |
| CDX85680 | Canola | mitochondrion, plastid | 35.62 | 74.15 |
| Bra021976.1-P | Field mustard | plastid | 86.27 | 70.97 |
| CDY50776 | Canola | cytosol | 8.5 | 35.14 |
| CDX99619 | Canola | cytosol | 6.86 | 30.88 |
| CDX79314 | Canola | cytosol, plastid | 37.91 | 30.61 |
| CDX67997 | Canola | cytosol | 37.25 | 30.16 |
| CDY27584 | Canola | cytosol | 21.9 | 28.88 |
| CDX87387 | Canola | plastid | 37.25 | 28.36 |
| CDX88533 | Canola | plastid | 37.25 | 28.29 |
| CDY39835 | Canola | cytosol | 29.09 | 24.25 |
| CDX84471 | Canola | cytosol, mitochondrion | 28.76 | 24.24 |
| CDY31343 | Canola | cytosol | 28.76 | 23.98 |
| CDY43775 | Canola | cytosol, mitochondrion | 28.76 | 23.98 |
| CDX84957 | Canola | cytosol | 29.41 | 23.38 |
| CDX91062 | Canola | cytosol, plastid | 31.7 | 21.46 |
| CDX85597 | Canola | cytosol, plastid | 31.37 | 21.29 |
| CDY01855 | Canola | cytosol, plastid | 30.39 | 21.09 |
| CDY56212 | Canola | plastid | 30.07 | 20.86 |
| CDX69581 | Canola | nucleus, plastid | 31.7 | 20.82 |
| CDX70564 | Canola | cytosol, plastid | 32.03 | 20.81 |
| CDY49066 | Canola | cytosol | 31.05 | 20.65 |
| CDY37509 | Canola | cytosol | 31.05 | 20.65 |
| CDY09854 | Canola | nucleus, plastid | 31.37 | 20.6 |
| CDX78576 | Canola | cytosol, plastid | 31.7 | 20.59 |
| CDX91935 | Canola | cytosol | 30.39 | 20.35 |
| CDX74310 | Canola | cytosol | 30.39 | 20.31 |
| CDX98983 | Canola | cytosol, plastid | 12.75 | 15.92 |
| GSMUA_AchrUn_... | Banana | cytosol | 7.52 | 12.37 |
| CDY03984 | Canola | cytosol | 11.44 | 11.78 |
| CDX98984 | Canola | cytosol | 20.26 | 10.56 |
| CDX70026 | Canola | cytosol | 19.93 | 10.36 |
| CDY49067 | Canola | extracellular | 4.9 | 10.0 |
| CDY00235 | Canola | cytosol | 18.63 | 9.83 |
| CDX81044 | Canola | cytosol | 18.63 | 9.71 |
| CDX78287 | Canola | cytosol | 18.63 | 9.71 |
| CDX86951 | Canola | cytosol | 17.97 | 9.48 |
| CDY06335 | Canola | cytosol | 17.97 | 9.43 |
| CDY22660 | Canola | cytosol | 17.65 | 9.29 |
| OQU79015 | Sorghum | mitochondrion | 1.63 | 6.02 |
| CDY27585 | Canola | cytosol | 2.29 | 5.38 |
| CDY25816 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY52873 | EnsemblPlantsGene:GSBRNA2T00008030001 | InterPro:Copine | PANTHER:PTHR10857 | PANTHER:PTHR10857:SF47 | PFAM:PF07002 |
| ProteinID:CDY52873 | ProteinID:CDY52873.1 | SEG:seg | UniParc:UPI0004EE109A | UniProt:A0A078IV47 | MapMan:19.2.2.1.5.3.2 |
| MapMan:19.2.2.1.6.2 | : | : | : | : | : |
Description
BnaCnng23610DBnaCnng23610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IV47]
Coordinates
chrLK033138:-:15697..17113
Molecular Weight (calculated)
33973.5 Da
IEP (calculated)
4.870
GRAVY (calculated)
0.128
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSTLSKFLT LTYYDACVSQ SALATDSAAV TLTLSLRLRR CFSDYSAVRI LLCPRLQISS CSSLSYATSD LFPFSTTRFR WLLYSRIYHL YGVLATSHRL
101: GIVIDTDLGK LRSALRAIVN PYENAIFVIG KTLAPSNEDN FISCFGFVDS TTHGDEVFSL HSDNSPSHGF EDVLPCYRGF TPNFPLSGPI SYELLIDAAV
201: DIVEQSNRQF HVLVIGADGH VNVGDGPWAD MRKMGDLIPK RVDLSGIISS PISVPFVSFF DLDLLSAKFL NFTEIMREGP SELAKEREFS LTDLICDSDE
301: EWIRGG
101: GIVIDTDLGK LRSALRAIVN PYENAIFVIG KTLAPSNEDN FISCFGFVDS TTHGDEVFSL HSDNSPSHGF EDVLPCYRGF TPNFPLSGPI SYELLIDAAV
201: DIVEQSNRQF HVLVIGADGH VNVGDGPWAD MRKMGDLIPK RVDLSGIISS PISVPFVSFF DLDLLSAKFL NFTEIMREGP SELAKEREFS LTDLICDSDE
301: EWIRGG
001: MTMGNFLKRF GSGKSRSSRN MTLGTTSSQS HEPSPSDPSL SLADNTNATK KKYALIPDRF SSLDQVSKAL REAGLESSNL ILGVDFTKSN EWTGKTSFDG
101: KCLHALGETS NPYEKAIFVI GQTLAPFDED NLIPCFGFGD STTHDEEVFG FHSDNSPCHG FEEVLACYKR IAPNLRLSGP TSYGPLIDAA VDIVEKNNGQ
201: FHVLVIVADG QVTRGTDMAE GELSQQEKTT IDAIVNASSY ALSIVLVGVG DGPWEDMRKF DDKIPKREFD NFQFVNFTEI MTRNSPESAK ETAFALAALM
301: EIPFQYQAAI ELRLLGKQTG LAKTIVPRPP PIPYTPPTNA ELPSTASPAS PEQTQSCPIC LTNRKDVAFS CGHMTCGDCG SKISNCPICR VRITNRLKLY
401: T
101: KCLHALGETS NPYEKAIFVI GQTLAPFDED NLIPCFGFGD STTHDEEVFG FHSDNSPCHG FEEVLACYKR IAPNLRLSGP TSYGPLIDAA VDIVEKNNGQ
201: FHVLVIVADG QVTRGTDMAE GELSQQEKTT IDAIVNASSY ALSIVLVGVG DGPWEDMRKF DDKIPKREFD NFQFVNFTEI MTRNSPESAK ETAFALAALM
301: EIPFQYQAAI ELRLLGKQTG LAKTIVPRPP PIPYTPPTNA ELPSTASPAS PEQTQSCPIC LTNRKDVAFS CGHMTCGDCG SKISNCPICR VRITNRLKLY
401: T
Arabidopsis Description
RGLG4E3 ubiquitin-protein ligase RGLG4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAL0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.