CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56212	Canola	plastid	99.32	99.32
AT1G67800.2	Thale cress	plasma membrane	84.13	81.9
CDX84957	Canola	cytosol	68.03	77.92
CDY27584	Canola	cytosol	40.59	77.16
VIT_01s0137g00460.t01	Wine grape	nucleus	64.85	64.71
KRH43098	Soybean	endoplasmic reticulum, golgi	67.12	64.35
CDY27585	Canola	cytosol	18.82	63.85
CDX91062	Canola	cytosol, plastid	65.08	63.5
KRH59243	Soybean	endoplasmic reticulum, golgi	66.21	63.48
CDX85597	Canola	cytosol, plastid	64.85	63.41
KRG97516	Soybean	golgi, plasma membrane	65.99	63.4
KRH31355	Soybean	golgi, plasma membrane	66.44	63.28
CDY09854	Canola	nucleus, plastid	65.99	62.45
CDX69581	Canola	nucleus, plastid	65.76	62.23
CDX78576	Canola	cytosol, plastid	65.99	61.78
CDX70564	Canola	cytosol, plastid	65.53	61.36
Os01t0908700-01	Rice	plasma membrane, plastid	60.77	60.09
CDX91935	Canola	cytosol	61.9	59.74
CDX74310	Canola	cytosol	61.9	59.61
CDY49066	Canola	cytosol	62.13	59.57
GSMUA_Achr8P01300_001	Banana	nucleus	58.5	59.45
CDY37509	Canola	cytosol	61.9	59.35
TraesCS5B01G111900.1	Wheat	cytosol	32.43	59.34
Zm00001d048784_P001	Maize	cytosol	41.27	59.09
EES04073	Sorghum	nucleus	61.45	59.04
CDX84471	Canola	cytosol, mitochondrion	48.3	58.68
CDY49067	Canola	extracellular	19.95	58.67
GSMUA_Achr9P29460_001	Banana	nucleus	61.9	58.33
GSMUA_Achr6P06710_001	Banana	nucleus	60.54	58.04
CDY43775	Canola	cytosol, mitochondrion	48.3	58.04
TraesCS3B01G449200.1	Wheat	cytosol	61.45	58.03
TraesCS3D01G408900.1	Wheat	cytosol	61.22	57.94
CDY31343	Canola	cytosol	47.85	57.49
CDY39835	Canola	cytosol	47.39	56.95
Zm00001d042437_P005	Maize	cytosol	60.77	56.78
CDX79314	Canola	cytosol, plastid	47.62	55.41
CDY50776	Canola	cytosol	9.3	55.41
CDX67997	Canola	cytosol	47.17	55.03
TraesCS3A01G414400.2	Wheat	cytosol	53.74	54.36
Zm00001d012101_P002	Maize	mitochondrion	61.9	53.74
CDX99619	Canola	cytosol	8.16	52.94
CDX88533	Canola	plastid	47.85	52.36
CDX87387	Canola	plastid	47.39	51.99
TraesCS5D01G122000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	58.5	48.04
Os12t0288400-01	Rice	endoplasmic reticulum, extracellular, vacuole	59.41	47.99
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	58.5	47.69
HORVU5Hr1G039100.3	Barley	endoplasmic reticulum, extracellular, golgi	57.82	47.31
HORVU3Hr1G092250.6	Barley	plastid	57.82	45.95
TraesCS5A01G103800.2	Wheat	endoplasmic reticulum, extracellular, golgi	58.05	45.8
OQU79014	Sorghum	plastid	52.15	43.48
CDX85680	Canola	mitochondrion, plastid	11.34	34.01
CDY52873	Canola	plastid	21.09	30.39
CDX98983	Canola	cytosol, plastid	15.19	27.35
CDX72278	Canola	plastid	22.9	27.22
CDY03984	Canola	cytosol	17.46	25.93
CDY25816	Canola	cytosol	2.27	20.41
CDX98984	Canola	cytosol	21.77	16.35
CDX70026	Canola	cytosol	21.77	16.3
CDX81044	Canola	cytosol	21.54	16.18
CDX78287	Canola	cytosol	21.54	16.18
CDY00235	Canola	cytosol	20.86	15.86
CDY06335	Canola	cytosol	20.86	15.78
CDY22660	Canola	cytosol	20.63	15.66
CDX86951	Canola	cytosol	20.18	15.34

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	GO:A0A078EIF8	EnsemblPlants:CDY01855	ProteinID:CDY01855
ProteinID:CDY01855.1	InterPro:Copine	EnsemblPlantsGene:GSBRNA2T00113034001	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083
InterPro:IPR036465	PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF28
SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0004EF35BA	InterPro:VWF_A	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:	:

Description

BnaC06g28950D

Coordinates

chrLK031929:-:879344..882003

Molecular Weight (calculated)

48206.2 Da

IEP (calculated)

6.503

GRAVY (calculated)

-0.427

Length

441 amino acids

Sequence
(BLAST)

001: MGGSSSKDSN RGGRSSRRYS GSPSASSSAS SWGPYGDHQN SSYHTPSHPS ASPAPSYNNP RWQTQKNLER KYSRIGDNYR SIDEVTAALS HAGLESSNLI
101: VGIDVTKSNE WTGARSFGRK SLHYIGTTPN PYQQAISIIG KTLSVFDEDN LIPCYGFGDA TTHDQDVFSF NANDTFCNGF EEVLMCYREI VPQLRLAGPT
201: SFAPIIERAI TIVEESGGQY HVLLIIADGQ VTRSVDTEHG AVSPQEQQTI DAIVRASEYP LSIVLVGVGD GPWDTMRQFD DNIPARAFDN FQFVNFTEIM
301: SKNVDPARKE AEFALSALME IPSQYKATLE LGLLGRRTGN CPNRFALPPP TYAAQSMRNS PRTSRSTSFQ TRTPQAYDSG VAAATAPVPN ARNDGQLCPI
401: CLVIPKNMAF NCGHQTCSDC GEDLHVCPIC RSSISVRIKL Y

Best Arabidopsis Sequence Match ( AT1G67800.4 )
(BLAST)

001: MGGSSSKESP RGGGSGRRYE RSVSGSSSYS SAWDQSSYYQ TPNHPSASPV SSYNSGRQTP KNLERKYSRI ADNYRSIDEV TAALSHAGLE SSNLIVGIDV
101: TKSNEWTGAR SFGRKSLHFI GTTPNPYQQA ISIIGKTLSV FDEDNLIPCY GFGDATTHDQ DVFSFNPNDT YCNGFEEVLM CYREIVPQLR LSGPTSFAPI
201: IERAMTIVEE SGGQYHVLLI IADGQVTRSV DTDNGGFSPQ EQQTIDAIVR ASEYPLSIVL VGVGDGPWDT MRQFDDNIPA RAFDNFQFVN FTDIMSKNID
301: PARKEAEFAL SALMEIPSQY KATLELGLLG QRTGHCPDRI ALPPPTYATQ SMRNSPRTSR STSFQNKPYD NGVSSTPPST THNESQQQFC PVCLVSAKNM
401: AFNCGHQTCA GCGEDLHVCP ICRSSISVRI KLY

Arabidopsis Description

Copine (Calcium-dependent phospholipid-binding protein) family [Source:UniProtKB/TrEMBL;Acc:F4HTR6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.