CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	86.77	84.84
Os12t0288400-01	Rice	endoplasmic reticulum, extracellular, vacuole	75.24	72.89
TraesCS5D01G122000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	70.32	69.27
HORVU5Hr1G039100.3	Barley	endoplasmic reticulum, extracellular, golgi	69.19	67.9
TraesCS5B01G111900.1	Wheat	cytosol	30.81	67.63
TraesCS5A01G103800.2	Wheat	endoplasmic reticulum, extracellular, golgi	69.0	65.3
CDY27584	Canola	cytosol	27.79	63.36
KRH63659	Soybean	cytosol, mitochondrion, nucleus, plastid	45.56	56.44
KRH54288	Soybean	cytosol, mitochondrion, nucleus, plastid	45.37	56.07
CDX85597	Canola	cytosol, plastid	47.45	55.65
Bra023465.1-P	Field mustard	cytosol, plastid	47.45	55.65
KRG94356	Soybean	nucleus	44.99	55.61
Solyc03g111870.2.1	Tomato	nucleus	45.94	55.61
EES04073	Sorghum	nucleus	48.2	55.56
Bra032793.1-P	Field mustard	nucleus	40.08	55.5
CDX84957	Canola	cytosol	40.26	55.32
VIT_17s0000g09640.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	45.18	55.2
CDX91062	Canola	cytosol, plastid	47.07	55.09
KRH43098	Soybean	endoplasmic reticulum, golgi	47.45	54.57
AT5G14420.2	Thale cress	nucleus, plastid	48.2	54.49
CDX74310	Canola	cytosol	47.07	54.37
Bra000997.1-P	Field mustard	nucleus	47.07	54.37
VIT_01s0137g00460.t01	Wine grape	nucleus	45.37	54.3
CDX91935	Canola	cytosol	46.88	54.27
GSMUA_Achr6P06710_001	Banana	nucleus	47.07	54.13
EER98488	Sorghum	endoplasmic reticulum, golgi	31.95	53.99
VIT_14s0066g00290.t01	Wine grape	mitochondrion	46.88	53.8
CDX69581	Canola	nucleus, plastid	47.26	53.65
Bra008758.1-P	Field mustard	nucleus	47.26	53.65
Bra039105.1-P	Field mustard	nucleus	46.12	53.51
CDY49066	Canola	cytosol	46.5	53.48
KRH59243	Soybean	endoplasmic reticulum, golgi	46.5	53.48
CDX70564	Canola	cytosol, plastid	47.45	53.29
CDY37509	Canola	cytosol	46.31	53.26
CDY09854	Canola	nucleus, plastid	46.88	53.22
Bra006253.1-P	Field mustard	nucleus, plastid	47.26	53.08
CDX78576	Canola	cytosol, plastid	47.26	53.08
KRG97516	Soybean	golgi, plasma membrane	45.94	52.94
Bra004260.1-P	Field mustard	plastid	43.67	52.38
CDY56212	Canola	plastid	43.67	52.38
CDY01855	Canola	cytosol, plastid	43.48	52.15
KXG20338	Sorghum	nucleus	44.05	52.13
KXG25698	Sorghum	cytosol	39.51	51.99
KRH31355	Soybean	golgi, plasma membrane	45.37	51.84
EES13310	Sorghum	mitochondrion	39.89	51.72
AT1G67800.2	Thale cress	plasma membrane	44.23	51.66
PGSC0003DMT400032842	Potato	mitochondrion	47.26	51.44
Solyc02g093520.2.1	Tomato	nucleus	47.07	50.61
KRG93947	Soybean	nucleus	46.88	50.0
KRH58251	Soybean	nucleus	45.94	49.49
AT3G01650.2	Thale cress	cytosol	45.75	49.49
KXG34172	Sorghum	nucleus	35.16	48.06
KRG95016	Soybean	nucleus, peroxisome, plasma membrane	27.03	39.5
AT1G24545.1	Thale cress	cytosol	13.23	38.46
CDY27585	Canola	cytosol	7.18	29.23
PGSC0003DMT400039186	Potato	cytosol	44.99	24.79
KXG21864	Sorghum	cytosol	17.58	15.9
KXG30293	Sorghum	cytosol	16.07	14.71
OQU79015	Sorghum	mitochondrion	0.57	3.61

Protein Annotations

EnsemblPlants:OQU79014	EnsemblPlantsGene:SORBI_3008G088806	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:Copine
InterPro:IPR002035	InterPro:IPR036465	InterPro:VWF_A	InterPro:vWFA_dom_sf	PANTHER:PTHR10857	PANTHER:PTHR10857:SF68
PFAM:PF07002	ProteinID:OQU79014	ProteinID:OQU79014.1	SEG:seg	SMART:SM00327	SUPFAM:SSF53300
TMHMM:TMhelix	UniParc:UPI000B8BA6CA	UniProt:A0A1Z5R5F9	MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	:

Description

hypothetical protein

Coordinates

chr8:+:19696678..19709922

Molecular Weight (calculated)

58102.7 Da

IEP (calculated)

5.238

GRAVY (calculated)

-0.223

Length

529 amino acids

Sequence
(BLAST)

001: MHSHQPALFQ IPLTRRSAIR SEFTTVLSLL IGMSGFLAVV GKIGTFLLWV LFLVLQTATR IVGSLLASPA EQQEDHQQES AVGRRRSPPA SPRRELYEPA
101: SAPPAQLWDP PPLPYLAFAP AADENPSSSF RRRASAPLPR ADEDVVVSSS AYSRPTVAVA HTNSVSATPL RTIETRAMPS RLATAGGKRP RLERKYSKIL
201: DQYRSLDEVI EALAQAGLES SNLIIGIDFT KSNEWTGKKS FNGMSLHNIS DNPNPYEQAI TIIGKTLSAF DEDNLIPCFG FGDASTHDQD VFAFYPDERP
301: CNGFQEALAR YREIVPHLRL SGPTSFAPII EMATTIVEQS GGQYHVLVII ADGQVTRSVD TEFGQLSTQE QMTVDAIVQA SEFPLSIILV GVGDGPWDMM
401: KEFDDNIPAR SFDNFQFVNF TAIMSKMISH SKKETEFALS ALMEIPLQYK ATLELGILGR RIGESPERIS LPPPFASYST VSRAESSWAN SYRSVPSHPR
501: EEPTVDSTNT ASVTSPSAAE SRVLEPQIN

Best Arabidopsis Sequence Match ( AT5G14420.1 )
(BLAST)

001: MGTGNSKENW RQSSFRSTSA SSASPSSSSW ASQQSYPQYG AESYNYPPPP SYAQPPEYTQ PPPPLYSTQP YSAPSYSAPP SQSYGSDNKK RLERKYSKIS
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY

Arabidopsis Description

RGLG2E3 ubiquitin-protein ligase RGLG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY87]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.