Factsheet for VIT_17s0000g09640.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63659	Soybean	cytosol, mitochondrion, nucleus, plastid	75.75	76.81
KRH54288	Soybean	cytosol, mitochondrion, nucleus, plastid	75.06	75.93
VIT_01s0137g00460.t01	Wine grape	nucleus	74.36	72.85
Solyc03g111870.2.1	Tomato	nucleus	72.52	71.85
VIT_14s0066g00290.t01	Wine grape	mitochondrion	72.06	67.68
Zm00001d048784_P001	Maize	cytosol	45.96	64.61
GSMUA_Achr9P29460_001	Banana	nucleus	69.52	64.32
TraesCS5B01G111900.1	Wheat	cytosol	35.8	64.32
Os01t0908700-01	Rice	plasma membrane, plastid	65.59	63.68
EES04073	Sorghum	nucleus	67.44	63.62
GSMUA_Achr8P01300_001	Banana	nucleus	63.28	63.13
TraesCS3B01G449200.1	Wheat	cytosol	67.44	62.53
TraesCS3D01G408900.1	Wheat	cytosol	67.21	62.45
VIT_04s0044g01620.t01	Wine grape	cytosol	52.19	61.58
Zm00001d042437_P005	Maize	cytosol	66.74	61.23
GSMUA_Achr6P06710_001	Banana	nucleus	64.9	61.09
VIT_19s0085g01000.t01	Wine grape	extracellular	52.66	59.22
TraesCS3A01G414400.2	Wheat	cytosol	59.12	58.72
VIT_00s0780g00040.t01	Wine grape	cytosol, mitochondrion, nucleus	58.43	57.89
Zm00001d012101_P002	Maize	mitochondrion	66.51	56.69
TraesCS5D01G122000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	63.74	51.4
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	63.51	50.83
Os12t0288400-01	Rice	endoplasmic reticulum, extracellular, vacuole	63.97	50.73
HORVU5Hr1G039100.3	Barley	endoplasmic reticulum, extracellular, golgi	63.05	50.65
HORVU3Hr1G092250.6	Barley	plastid	63.51	49.55
TraesCS5A01G103800.2	Wheat	endoplasmic reticulum, extracellular, golgi	63.05	48.84
OQU79014	Sorghum	plastid	55.2	45.18
VIT_18s0001g15760.t01	Wine grape	cytosol, extracellular	7.39	33.33
PGSC0003DMT400039186	Potato	cytosol	72.06	32.5
VIT_18s0072g00560.t01	Wine grape	peroxisome	11.55	29.76
VIT_14s0030g00540.t01	Wine grape	cytosol	18.71	17.69
VIT_14s0030g00550.t01	Wine grape	cytosol	18.71	16.95
VIT_14s0030g00600.t01	Wine grape	cytosol	19.86	16.54
VIT_17s0000g00210.t01	Wine grape	cytosol	21.25	15.97
VIT_12s0121g00080.t01	Wine grape	cytosol	21.48	15.63
VIT_14s0030g00500.t01	Wine grape	cytosol	21.25	15.49
VIT_14s0030g00570.t01	Wine grape	cytosol	21.48	13.94

Protein Annotations

EntrezGene:100251913	wikigene:100251913	MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	ProteinID:CBI14914
ProteinID:CBI14914.3	InterPro:Copine	UniProt:D7SHF5	EMBL:FN594950	InterPro:IPR001841	InterPro:IPR002035
InterPro:IPR013083	InterPro:IPR036465	EntrezGene:LOC100251913	wikigene:LOC100251913	PFAM:PF07002	PFAM:PF13920
PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF62	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850
TIGR:TC59447	TIGR:TC64455	UniParc:UPI00019851C7	ArrayExpress:VIT_17s0000g09640	EnsemblPlantsGene:VIT_17s0000g09640	EnsemblPlants:VIT_17s0000g09640.t01
InterPro:VWF_A	unigene:Vvi.3612	RefSeq:XP_002279018	RefSeq:XP_002279018.1	RefSeq:XP_010663074.1	RefSeq:XP_010663075.1
RefSeq:XP_019082135.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:

Description

No Description!

Coordinates

chr17:+:11401567..11406230

Molecular Weight (calculated)

47967.2 Da

IEP (calculated)

6.450

GRAVY (calculated)

-0.505

Length

433 amino acids

Sequence
(BLAST)

001: MGGKSSKRSI SRQSSHLGSS SYSWGHHDQS QIPYAQPAPG YLPQQHYNHP PPTYGGQNPG SKRKYSKIED NYNSLDQVTS ALAQAGLESS NLIVGIDFTK
101: SNEWTGARSF YRRSLHHVGD DQNPYEQAIS IIGKTLSKFD DDNLIPCFGF GDASTHDRDV FSFYSDERFC NGFEEVLKRY RELVPHLRLA GPTSFAPIVE
201: MAITIVEQSG GQYHVLLIIA DGQVTRSVDT EHGQLSPQEK RTVEAIVKAS EYPLSIILVG VGDGPWDMMK EFDDNMPARA FDNFQFVNFT EIMSKNMDRS
301: RKETEFALSA LMEIPSQYKA TMELNILGSH RGKAIDRVPL PPPLYGANSF SYSKPPQSSS FQPSAPSSDQ HSASIHTSAP ASSLADNNVC PICLTNKKDM
401: AFGCGHQTCC ECGPDLDLCP ICRSPIQTRI KLY

Best Arabidopsis Sequence Match ( AT5G14420.1 )
(BLAST)

001: MGTGNSKENW RQSSFRSTSA SSASPSSSSW ASQQSYPQYG AESYNYPPPP SYAQPPEYTQ PPPPLYSTQP YSAPSYSAPP SQSYGSDNKK RLERKYSKIS
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY

Arabidopsis Description

RGLG2E3 ubiquitin-protein ligase RGLG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY87]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.