Factsheet for VIT_14s0030g00540.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_15s0048g02070.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G08860.1	VIT_15s0048g02070.t01	AT2G45760.1	17631528

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0030g00550.t01	Wine grape	cytosol	95.2	91.21
VIT_18s0072g00560.t01	Wine grape	peroxisome	31.66	86.31
VIT_18s0001g15760.t01	Wine grape	cytosol, extracellular	17.47	83.33
VIT_14s0030g00600.t01	Wine grape	cytosol	94.32	83.08
VIT_14s0030g00500.t01	Wine grape	cytosol	96.29	74.24
VIT_12s0121g00080.t01	Wine grape	cytosol	95.41	73.45
Solyc10g045500.1.1	Tomato	cytosol	19.43	69.53
VIT_14s0030g00570.t01	Wine grape	cytosol	95.2	65.37
KRH68626	Soybean	cytosol	70.09	55.34
AT1G08860.1	Thale cress	cytosol	69.87	54.79
KRH68625	Soybean	cytosol	69.87	54.15
KRG96891	Soybean	cytosol	69.87	53.87
CDY06335	Canola	cytosol	68.12	53.52
CDY22660	Canola	cytosol	67.69	53.36
Bra031645.1-P	Field mustard	cytosol	67.9	53.34
GSMUA_Achr5P08050_001	Banana	cytosol	69.0	53.2
VIT_17s0000g00210.t01	Wine grape	cytosol	65.94	52.43
KXG21864	Sorghum	cytosol	66.59	52.14
TraesCS1B01G247700.2	Wheat	cytosol	65.94	51.19
TraesCS1A01G236100.4	Wheat	cytosol	65.72	51.02
Os05t0373300-01	Rice	plasma membrane	66.38	51.01
TraesCS1D01G236200.1	Wheat	cytosol	65.5	50.85
HORVU6Hr1G010680.1	Barley	cytosol	65.5	50.51
Zm00001d037872_P001	Maize	plasma membrane	64.41	50.08
TraesCS6B01G074300.2	Wheat	cytosol	64.41	50.0
TraesCS6D01G057900.2	Wheat	cytosol	63.97	49.66
TraesCS6A01G058200.2	Wheat	cytosol, plastid	64.63	46.76
HORVU1Hr1G058000.10	Barley	cytosol	65.5	45.39
TraesCS7A01G414000.1	Wheat	cytosol	51.31	39.97
VIT_04s0044g01620.t01	Wine grape	cytosol	16.38	20.44
VIT_01s0137g00460.t01	Wine grape	nucleus	19.0	19.68
VIT_19s0085g01000.t01	Wine grape	extracellular	16.16	19.22
VIT_00s0780g00040.t01	Wine grape	cytosol, mitochondrion, nucleus	18.12	18.99
VIT_17s0000g09640.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	17.69	18.71
VIT_14s0066g00290.t01	Wine grape	mitochondrion	18.78	18.66

Protein Annotations

Gene3D:2.60.40.150	MapMan:27.2.7	InterPro:BONZAI	InterPro:C2B_Copine	InterPro:C2_dom	InterPro:C2_domain_sf
ProteinID:CCB58154	ProteinID:CCB58154.1	InterPro:Copine	UniProt:F6HTZ3	EMBL:FN596249	GO:GO:0003674
GO:GO:0005488	GO:GO:0005544	GO:GO:0008150	GO:GO:0008219	GO:GO:0008289	GO:GO:0009987
GO:GO:0060548	InterPro:IPR000008	InterPro:IPR002035	InterPro:IPR035892	InterPro:IPR036465	PFAM:PF00168
PFAM:PF07002	PFscan:PS50004	PANTHER:PTHR10857	PANTHER:PTHR10857:SF108	SMART:SM00239	SMART:SM00327
SUPFAM:SSF49562	SUPFAM:SSF53300	UniParc:UPI000210A183	ArrayExpress:VIT_14s0030g00540	EnsemblPlantsGene:VIT_14s0030g00540	EnsemblPlants:VIT_14s0030g00540.t01
InterPro:VWF_A	SEG:seg	InterPro:vWFA_dom_sf	:	:	:

Description

No Description!

Coordinates

chr14:-:4530859..4536575

Molecular Weight (calculated)

50163.9 Da

IEP (calculated)

5.630

GRAVY (calculated)

-0.081

Length

458 amino acids

Sequence
(BLAST)

001: MLKLNDQEFL GEGGCVLSEI VTKQGQSLTL DLHNRNGNRG LKNLGKLTVH AEETVASRNA IEVIFHCSRL ENKDLFSKSD PFLRISRIVE NGGSIPICKT
101: EVVDNNLNPI WRPLCLTMQQ FVSKDNPLVI ECFDFNSSGN HVLIGKLQKS VADLEKLHKQ KTGANFILPS SAQHGYEKVL KGQLFVDQFC EKPLYSFIDY
201: VSSGFELNFM VAVDFTASNG NPRTPDSLHY IDPSGQFNAY QQAIMEVGEV IQFYDSDKRF PAWGFGGRTI DGTISHCFNL NGSASGVEVE GVQGIMAAYA
301: SALNHVALAG PTLFGQVINN AAEIAGQSLS YSSCKYFVLL IITDGVLTDL QETKDALVRA SDLPLSILIV GVRGADFKQM EILDADDGRR LESSTGRVAT
401: RDIVQFVPMR EVRAGGQTSV VQALLEELPG QFLTYMRSRD IKPGAVNIAQ TSASHATI

Best Arabidopsis Sequence Match ( AT1G08860.1 )
(BLAST)

001: MGGCLSGDVK GGKQAIGGVQ QRPTSSTIAN NAAHNDAVDF FFRSRGQYPL FSQIELTLSA SNLLDCDITS KSDPMAVMYL RKKDGRLEEI GRTEVILNNL
101: NPKWIEKITV SFQFEAVQTL VFHVYDVDTR YHNVPVKTLK LKDQDFLGEG TCVLSEIMTR QNRTLTLTLT GNVRAGVNRN LGTLSIQAEE TVASKTVAEI
201: NFRCVNLDNK DLFSKSDPFL RISRVVETSA AVPICRTEVV DNNLNPMWRP VCLTMQQFGS KDTPLVIECL DFNTSGNHEL IGKTEKSVAE LERLCLQKEA
301: ANFVYPSLSH GRNKVLKGQL IVDRYVEKVQ YSFLDYISSG FELNFMVAVD FTASNGDPRT PSSLHYIDPS GRLNSYQQAI MEVGEVIQFY DSDKRFPAWG
401: FGGRTSDGSV SHAFNLNGAS YGDEVVGVEG IMVAYASALR NVSLAGPTLF SNVVDKAAHT ASQSLSQNSP KYFVLLIITD GVLTDMAGTV DALVRASDLP
501: LSVLIVGVGN TDFKQMEMLD ADNGRRLESS TGRIATRDIV QFVPMKDIHS GLVSVVQALL EELPGQFLTY VRSRKINPIG APAI

Arabidopsis Description

BON3Protein BONZAI 3 [Source:UniProtKB/Swiss-Prot;Acc:Q5XQC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.