Factsheet for VIT_17s0000g00210.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_15s0048g02070.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07300.1	VIT_15s0048g02070.t01	AT2G45760.1	17631528

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41052	Soybean	endoplasmic reticulum	79.51	78.97
KRH54085	Soybean	cytosol	76.74	76.47
Solyc03g118200.2.1	Tomato	cytosol	75.17	74.66
AT5G61900.3	Thale cress	cytosol	73.78	73.53
CDX98983	Canola	cytosol, plastid	31.25	73.47
Bra029301.1-P	Field mustard	cytosol, plastid	73.26	72.63
Bra010041.1-P	Field mustard	cytosol	72.92	72.41
CDY00235	Canola	cytosol	72.92	72.41
KRH20017	Soybean	cytosol	34.2	72.16
Solyc06g068840.2.1	Tomato	cytosol	71.88	71.75
Bra005931.1-P	Field mustard	cytosol	73.09	71.72
CDX78287	Canola	cytosol	73.09	71.72
CDX86951	Canola	cytosol	72.05	71.55
CDX81044	Canola	cytosol	72.92	71.55
AT5G07300.1	Thale cress	cytosol	72.57	71.33
CDX98984	Canola	cytosol	72.22	70.87
CDX70026	Canola	cytosol	72.4	70.8
Bra009273.1-P	Field mustard	cytosol	72.22	70.63
KRH63871	Soybean	cytosol	75.87	70.26
GSMUA_AchrUn_...	Banana	cytosol, golgi, plastid	52.95	69.63
VIT_18s0072g00560.t01	Wine grape	peroxisome	19.97	68.45
VIT_18s0001g15760.t01	Wine grape	cytosol, extracellular	11.11	66.67
VIT_14s0030g00540.t01	Wine grape	cytosol	52.43	65.94
VIT_14s0030g00550.t01	Wine grape	cytosol	54.51	65.69
Os02t0521300-01	Rice	plasma membrane	66.15	65.24
TraesCS6A01G189800.1	Wheat	cytosol	64.76	64.98
TraesCS6D01G176800.1	Wheat	cytosol, nucleus, plastid	64.58	64.81
VIT_14s0030g00600.t01	Wine grape	cytosol	58.51	64.81
TraesCS6B01G235200.1	Wheat	plastid	64.58	64.47
KXG30293	Sorghum	cytosol	64.41	64.19
Zm00001d016615_P002	Maize	plasma membrane	60.07	63.6
VIT_14s0030g00500.t01	Wine grape	cytosol	65.28	63.3
VIT_12s0121g00080.t01	Wine grape	cytosol	65.28	63.19
HORVU6Hr1G041140.14	Barley	mitochondrion	64.58	57.76
VIT_14s0030g00570.t01	Wine grape	cytosol	65.28	56.37
AT5G61910.4	Thale cress	cytosol	73.78	31.57
VIT_01s0137g00460.t01	Wine grape	nucleus	17.71	23.08
VIT_04s0044g01620.t01	Wine grape	cytosol	13.72	21.53
VIT_17s0000g09640.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	15.97	21.25
VIT_00s0780g00040.t01	Wine grape	cytosol, mitochondrion, nucleus	15.28	20.14
VIT_14s0066g00290.t01	Wine grape	mitochondrion	15.62	19.52
VIT_19s0085g01000.t01	Wine grape	extracellular	13.02	19.48

Protein Annotations

EntrezGene:100250795	wikigene:100250795	Gene3D:2.60.40.150	MapMan:27.2.7	EMBL:AM483321	InterPro:BONZAI
InterPro:C2B_Copine	InterPro:C2_dom	InterPro:C2_domain_sf	ProteinID:CAN73077	ProteinID:CAN73077.1	ProteinID:CBI15758
ProteinID:CBI15758.3	InterPro:Copine	UniProt:D7SH78	EMBL:FN594950	GO:GO:0003674	GO:GO:0005215
GO:GO:0005488	GO:GO:0005544	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0005774	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0008219
GO:GO:0008289	GO:GO:0009987	GO:GO:0015078	GO:GO:0015991	GO:GO:0015992	GO:GO:0016020
GO:GO:0016021	GO:GO:0033177	GO:GO:0033179	GO:GO:0060548	InterPro:IPR000008	InterPro:IPR002035
InterPro:IPR035892	InterPro:IPR036465	EntrezGene:LOC100250795	wikigene:LOC100250795	PFAM:PF00168	PFAM:PF07002
PFscan:PS50004	PANTHER:PTHR10857	PANTHER:PTHR10857:SF108	SMART:SM00239	SMART:SM00327	SUPFAM:SSF49562
SUPFAM:SSF53300	UniParc:UPI00015C9417	ArrayExpress:VIT_17s0000g00210	EnsemblPlantsGene:VIT_17s0000g00210	EnsemblPlants:VIT_17s0000g00210.t01	InterPro:VWF_A
RefSeq:XP_002280913	RefSeq:XP_002280913.1	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

No Description!

Coordinates

chr17:-:116880..141548

Molecular Weight (calculated)

63792.0 Da

IEP (calculated)

5.170

GRAVY (calculated)

-0.119

Length

576 amino acids

Sequence
(BLAST)

001: MGNCCSDDGG GRSAVGGTSA SQHDHNDAVD LFLKSRGYRG LFVQIELSLS ASNLRDRDVL SKSDPMAVVY TKSKDGALEE LGRTEVVLNS LNPMWFTKLI
101: INYQFEVVQT LVFRVYDVDT QFHNVDVKML KLDEQQFLGE ATCSLSEIVS KSNRSLTLDL VHREESIKST RSQNLGELTV HAEELSSSKI AMEIIFRCSD
201: LEYKDLFSRS DPFLVISKIV EGGISIPICK TEVIKNDLKP KWKSVFLNIQ QVGSKDNLLT IECFNFNSNG KHDLIGKIQK SLADLEKLHS SGQGENFFLP
301: TAVGNNHHNK VLKSQLFVEY FSETVEHTFL DYLAGGCELN FMVAIDFTAS NGNPRLPDSL HYIDPSGRPN AYQRAILEVG EVLQFYDSDK RFPAWGFGAR
401: PIDGPVSHCF NLNGSSNYCE VDGIQGIMMA YTSALFNVSL AGPTLFGPVI SSAAQIASQS LINGRQKYYV LLIITDGVIT DLQETKDALV KASDLPLSIF
501: ILGVGGADFK EMEVLDADKG ERLESSNGRV ASRDIVQFVP FRDVHSGEIS VVQALLAELP THFLTYMRTR NILPNS

Best Arabidopsis Sequence Match ( AT5G61910.4 )
(BLAST)

0001: METEMDFSDG EQTNGNSHVT ASQYFAPPGY NRSLVAAYGN GNTTIGLEKG IERRLDHHEQ LPGYIFMCNG RTKTDCYRYR VFGIPRGGKD VVESIKPGMK
0101: LFLYDFEKRL LYGVYEATVG GRLDIEPEAF EGKYPAQVGF RIVMNCLPLT ENTFKSAIYE NYKGSKFKQE LSPHQVMSLL SLFRSFTSPE LDLLPHRLAS
0201: RASAPRTLSF EERFIAATHL RNASSVLDPL SARHVEPRLG SVMAHQPVPR TSLLQHSYFR QDDYTTPPRE SLSNLNQPYY PTEARQLRLL GDPSRSDSPR
0301: SEPPRSSIQD PQLKYLTILS NIRRYGSASD RLASENEYHP ATPSEKDQFA VPYSDNKNYP STLSGSEHPS ASAANGSVYR SEFYNSASQK EGEASQQHEI
0401: PAGTYHHPEA STVSNTTKSM QPDMQAVSVA QSHTETAGYP TPAHGEASQP PAGAIGYTHQ PQSVAGNYST HSQPGNVEES TQSYAGTDSY SQQQYYAAMG
0501: PTTQLHAGGY IQKPHEIGYS QQPHDAATGY SQQPHDAATG YSQQPHDAAT GYSQQPHAAS TGYSQQTYAA ATGYTQQPHA AAAGYTQQPH AAATGYSQQP
0601: HAAATAHAQQ PYAAATAHAQ QLHAVATGYA LQLHAAATGY AQQPHAAATG YALQPHAQAV EYTMQPHAQA VGYMPQYHAH AVEIGMQCIS LITLRQQMQP
0701: QRIIKHLKTL KQSVATLDLR NLCVMGAEAW TRTGALSGKE GQGHKTRVSS SVYCTFESAV FFVGKSKIMG NCCSDVASGA GATAGVGGSG SSAALGATND
0801: ALDYYLKSKG FNGLFSQIEL SFSASNLRDR DVLSKSDPMV VVYQKEKDAT LSEVFRSEVV LNSLAPKWIK KFIVAYHFET VQTLVFRVYD VDTKFQNSRE
0901: EMLKLDEQQF LGEATCALSE IITKSTRTST LELKRKDGFA PQAQPHHGKL IIHAEESLAS KISTEIVFRC SNLESKDLFS KSDPFLVVSK IVEHGTPIPV
1001: SKTEVRKNDL NPIWKPVFLS VQQVGSKDSP VIIECSDFNS NGKHSLIGKV QKSLSDLEKL HLAGQGINFS LPTGAGQNKV LKSQLFVDKF TETVHHTFLE
1101: YLASGFELNF MVAIDFTASN GNPRLPDSLH YIDPSGRLNA YQRAIMDVGE VLQFYDSDKR FPAWGFGARP IDAPVSHCFN LNGSSSYSEV DGIQGIMTSY
1201: TSALFNVSLA GPTLFGPVIN AAAMIASASL AQGSRKYYVL LIITDGVITD LQETKDALVS ASDLPLSILI VGVGGADFKE MEILDADKGE RLESSSGRLA
1301: SRDIVQFVAL RDVQYGEISV VQALLAELPS QFLTYMRIRN MKPIPP

Arabidopsis Description

DCD (Development and Cell Death) domain protein [Source:UniProtKB/TrEMBL;Acc:F4K518]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.