Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g091590.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G07300.1 | Solyc01g091590.2.1 | AT2G45760.1 | 17631528 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g118200.2.1 | Tomato | cytosol | 80.42 | 80.0 |
| VIT_17s0000g00210.t01 | Wine grape | cytosol | 71.75 | 71.88 |
| KRH41052 | Soybean | endoplasmic reticulum | 70.88 | 70.52 |
| AT5G61900.3 | Thale cress | cytosol | 68.11 | 67.99 |
| Bra010041.1-P | Field mustard | cytosol | 68.28 | 67.93 |
| CDY00235 | Canola | cytosol | 68.28 | 67.93 |
| CDX86951 | Canola | cytosol | 68.11 | 67.76 |
| KRH54085 | Soybean | cytosol | 67.07 | 66.95 |
| Bra029301.1-P | Field mustard | cytosol, plastid | 67.07 | 66.61 |
| CDX98983 | Canola | cytosol, plastid | 28.08 | 66.12 |
| CDX98984 | Canola | cytosol | 66.72 | 65.59 |
| AT5G07300.1 | Thale cress | cytosol | 66.2 | 65.19 |
| CDX70026 | Canola | cytosol | 66.38 | 65.03 |
| CDX78287 | Canola | cytosol | 66.03 | 64.91 |
| Bra005931.1-P | Field mustard | cytosol | 66.03 | 64.91 |
| Bra009273.1-P | Field mustard | cytosol | 66.2 | 64.86 |
| CDX81044 | Canola | cytosol | 65.86 | 64.74 |
| KRH20017 | Soybean | cytosol | 30.5 | 64.47 |
| GSMUA_AchrUn_... | Banana | cytosol, golgi, plastid | 48.87 | 64.38 |
| KRH63871 | Soybean | cytosol | 66.2 | 61.41 |
| Os02t0521300-01 | Rice | plasma membrane | 59.1 | 58.39 |
| TraesCS6D01G176800.1 | Wheat | cytosol, nucleus, plastid | 56.85 | 57.14 |
| KXG30293 | Sorghum | cytosol | 57.19 | 57.09 |
| Solyc10g045500.1.1 | Tomato | cytosol | 12.65 | 57.03 |
| TraesCS6A01G189800.1 | Wheat | cytosol | 56.5 | 56.79 |
| Zm00001d016615_P002 | Maize | plasma membrane | 53.38 | 56.62 |
| TraesCS6B01G235200.1 | Wheat | plastid | 56.5 | 56.5 |
| HORVU6Hr1G041140.14 | Barley | mitochondrion | 57.02 | 51.09 |
| Solyc10g045520.1.1 | Tomato | cytosol | 10.92 | 45.32 |
| AT5G61910.4 | Thale cress | cytosol | 68.11 | 29.2 |
| Solyc03g111870.2.1 | Tomato | nucleus | 16.81 | 22.2 |
| Solyc09g065870.2.1 | Tomato | nucleus | 15.25 | 20.95 |
| Solyc02g093520.2.1 | Tomato | nucleus | 16.81 | 19.72 |
| Solyc05g053870.2.1 | Tomato | plastid | 15.08 | 19.29 |
Protein Annotations
| Gene3D:2.60.40.150 | MapMan:27.2.7 | InterPro:BONZAI | InterPro:C2B_Copine | InterPro:C2_dom | InterPro:C2_domain_sf |
| InterPro:Copine | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005544 | GO:GO:0008150 | GO:GO:0008219 |
| GO:GO:0008289 | GO:GO:0009987 | GO:GO:0060548 | InterPro:IPR000008 | InterPro:IPR002035 | InterPro:IPR035892 |
| InterPro:IPR036465 | UniProt:K4C858 | PFAM:PF00168 | PFAM:PF07002 | PFscan:PS50004 | PANTHER:PTHR10857 |
| PANTHER:PTHR10857:SF108 | SMART:SM00239 | SMART:SM00327 | SUPFAM:SSF49562 | SUPFAM:SSF53300 | EnsemblPlantsGene:Solyc06g068840.2 |
| EnsemblPlants:Solyc06g068840.2.1 | UniParc:UPI000276659B | InterPro:VWF_A | SEG:seg | InterPro:vWFA_dom_sf | : |
Description
No Description!
Coordinates
chr6:-:42655630..42666786
Molecular Weight (calculated)
63740.6 Da
IEP (calculated)
5.252
GRAVY (calculated)
-0.224
Length
577 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCCSDENG GHSGVGGNGA YAANQNNGHN EAFDALLKSR GYQGLYSHVE LSLSATGLRD RDVLSKSDPM VVIYSKGRDG SLQELSRTEV VPNSLNPKWI
101: TKYTIAYHFE TVQNLVFRVC DVDTQFHNQD VKMLKLEEQD FLGEASCTLS EIVTKSNGSL TLDIIRGEQS SGPTHAQKSG KLTICAEESV ASKTTVELKL
201: RCSELVSKDL FSKSDPFLVI SKYTESGMMV PICKTEIIKD DHSPKWKPII VNIQQVGSKD SPLTIECYDF NSNGKHDLIG KIQKSLSDLE VLHSTGSSTN
301: LFTSAAVGQS SQNKVLKSQL FVDSFFEKTQ HTFLDYLAWG YELNFMVAID FTASNGNPRL HDSLHYIDPS GRPNDYQRAI LDAGEVLQFY DRDRRYPAWG
401: FGARPIDGPV SHCFNLNGSS DYCEVEGIQG IMTAYMSALF NVSLAGPTIF GPVVTSAADI ANQSLMKRER KYFVLLIITD GVITDLQETM DALVHAADLP
501: LSVLIVGVGG ADFKEMEILD ADKQRLESTH GRVAVRDIVQ FVPFRDVQSG DSVLQALLAE LPSQFLEYMR LKRIQPT
101: TKYTIAYHFE TVQNLVFRVC DVDTQFHNQD VKMLKLEEQD FLGEASCTLS EIVTKSNGSL TLDIIRGEQS SGPTHAQKSG KLTICAEESV ASKTTVELKL
201: RCSELVSKDL FSKSDPFLVI SKYTESGMMV PICKTEIIKD DHSPKWKPII VNIQQVGSKD SPLTIECYDF NSNGKHDLIG KIQKSLSDLE VLHSTGSSTN
301: LFTSAAVGQS SQNKVLKSQL FVDSFFEKTQ HTFLDYLAWG YELNFMVAID FTASNGNPRL HDSLHYIDPS GRPNDYQRAI LDAGEVLQFY DRDRRYPAWG
401: FGARPIDGPV SHCFNLNGSS DYCEVEGIQG IMTAYMSALF NVSLAGPTIF GPVVTSAADI ANQSLMKRER KYFVLLIITD GVITDLQETM DALVHAADLP
501: LSVLIVGVGG ADFKEMEILD ADKQRLESTH GRVAVRDIVQ FVPFRDVQSG DSVLQALLAE LPSQFLEYMR LKRIQPT
0001: METEMDFSDG EQTNGNSHVT ASQYFAPPGY NRSLVAAYGN GNTTIGLEKG IERRLDHHEQ LPGYIFMCNG RTKTDCYRYR VFGIPRGGKD VVESIKPGMK
0101: LFLYDFEKRL LYGVYEATVG GRLDIEPEAF EGKYPAQVGF RIVMNCLPLT ENTFKSAIYE NYKGSKFKQE LSPHQVMSLL SLFRSFTSPE LDLLPHRLAS
0201: RASAPRTLSF EERFIAATHL RNASSVLDPL SARHVEPRLG SVMAHQPVPR TSLLQHSYFR QDDYTTPPRE SLSNLNQPYY PTEARQLRLL GDPSRSDSPR
0301: SEPPRSSIQD PQLKYLTILS NIRRYGSASD RLASENEYHP ATPSEKDQFA VPYSDNKNYP STLSGSEHPS ASAANGSVYR SEFYNSASQK EGEASQQHEI
0401: PAGTYHHPEA STVSNTTKSM QPDMQAVSVA QSHTETAGYP TPAHGEASQP PAGAIGYTHQ PQSVAGNYST HSQPGNVEES TQSYAGTDSY SQQQYYAAMG
0501: PTTQLHAGGY IQKPHEIGYS QQPHDAATGY SQQPHDAATG YSQQPHDAAT GYSQQPHAAS TGYSQQTYAA ATGYTQQPHA AAAGYTQQPH AAATGYSQQP
0601: HAAATAHAQQ PYAAATAHAQ QLHAVATGYA LQLHAAATGY AQQPHAAATG YALQPHAQAV EYTMQPHAQA VGYMPQYHAH AVEIGMQCIS LITLRQQMQP
0701: QRIIKHLKTL KQSVATLDLR NLCVMGAEAW TRTGALSGKE GQGHKTRVSS SVYCTFESAV FFVGKSKIMG NCCSDVASGA GATAGVGGSG SSAALGATND
0801: ALDYYLKSKG FNGLFSQIEL SFSASNLRDR DVLSKSDPMV VVYQKEKDAT LSEVFRSEVV LNSLAPKWIK KFIVAYHFET VQTLVFRVYD VDTKFQNSRE
0901: EMLKLDEQQF LGEATCALSE IITKSTRTST LELKRKDGFA PQAQPHHGKL IIHAEESLAS KISTEIVFRC SNLESKDLFS KSDPFLVVSK IVEHGTPIPV
1001: SKTEVRKNDL NPIWKPVFLS VQQVGSKDSP VIIECSDFNS NGKHSLIGKV QKSLSDLEKL HLAGQGINFS LPTGAGQNKV LKSQLFVDKF TETVHHTFLE
1101: YLASGFELNF MVAIDFTASN GNPRLPDSLH YIDPSGRLNA YQRAIMDVGE VLQFYDSDKR FPAWGFGARP IDAPVSHCFN LNGSSSYSEV DGIQGIMTSY
1201: TSALFNVSLA GPTLFGPVIN AAAMIASASL AQGSRKYYVL LIITDGVITD LQETKDALVS ASDLPLSILI VGVGGADFKE MEILDADKGE RLESSSGRLA
1301: SRDIVQFVAL RDVQYGEISV VQALLAELPS QFLTYMRIRN MKPIPP
0101: LFLYDFEKRL LYGVYEATVG GRLDIEPEAF EGKYPAQVGF RIVMNCLPLT ENTFKSAIYE NYKGSKFKQE LSPHQVMSLL SLFRSFTSPE LDLLPHRLAS
0201: RASAPRTLSF EERFIAATHL RNASSVLDPL SARHVEPRLG SVMAHQPVPR TSLLQHSYFR QDDYTTPPRE SLSNLNQPYY PTEARQLRLL GDPSRSDSPR
0301: SEPPRSSIQD PQLKYLTILS NIRRYGSASD RLASENEYHP ATPSEKDQFA VPYSDNKNYP STLSGSEHPS ASAANGSVYR SEFYNSASQK EGEASQQHEI
0401: PAGTYHHPEA STVSNTTKSM QPDMQAVSVA QSHTETAGYP TPAHGEASQP PAGAIGYTHQ PQSVAGNYST HSQPGNVEES TQSYAGTDSY SQQQYYAAMG
0501: PTTQLHAGGY IQKPHEIGYS QQPHDAATGY SQQPHDAATG YSQQPHDAAT GYSQQPHAAS TGYSQQTYAA ATGYTQQPHA AAAGYTQQPH AAATGYSQQP
0601: HAAATAHAQQ PYAAATAHAQ QLHAVATGYA LQLHAAATGY AQQPHAAATG YALQPHAQAV EYTMQPHAQA VGYMPQYHAH AVEIGMQCIS LITLRQQMQP
0701: QRIIKHLKTL KQSVATLDLR NLCVMGAEAW TRTGALSGKE GQGHKTRVSS SVYCTFESAV FFVGKSKIMG NCCSDVASGA GATAGVGGSG SSAALGATND
0801: ALDYYLKSKG FNGLFSQIEL SFSASNLRDR DVLSKSDPMV VVYQKEKDAT LSEVFRSEVV LNSLAPKWIK KFIVAYHFET VQTLVFRVYD VDTKFQNSRE
0901: EMLKLDEQQF LGEATCALSE IITKSTRTST LELKRKDGFA PQAQPHHGKL IIHAEESLAS KISTEIVFRC SNLESKDLFS KSDPFLVVSK IVEHGTPIPV
1001: SKTEVRKNDL NPIWKPVFLS VQQVGSKDSP VIIECSDFNS NGKHSLIGKV QKSLSDLEKL HLAGQGINFS LPTGAGQNKV LKSQLFVDKF TETVHHTFLE
1101: YLASGFELNF MVAIDFTASN GNPRLPDSLH YIDPSGRLNA YQRAIMDVGE VLQFYDSDKR FPAWGFGARP IDAPVSHCFN LNGSSSYSEV DGIQGIMTSY
1201: TSALFNVSLA GPTLFGPVIN AAAMIASASL AQGSRKYYVL LIITDGVITD LQETKDALVS ASDLPLSILI VGVGGADFKE MEILDADKGE RLESSSGRLA
1301: SRDIVQFVAL RDVQYGEISV VQALLAELPS QFLTYMRIRN MKPIPP
Arabidopsis Description
DCD (Development and Cell Death) domain protein [Source:UniProtKB/TrEMBL;Acc:F4K518]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.