Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| endoplasmic reticulum:
28499913
|
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH54085 | Soybean | cytosol | 82.07 | 82.35 |
| VIT_17s0000g00210.t01 | Wine grape | cytosol | 78.97 | 79.51 |
| KRH63871 | Soybean | cytosol | 82.24 | 76.69 |
| KRH20017 | Soybean | cytosol | 35.86 | 76.19 |
| Solyc03g118200.2.1 | Tomato | cytosol | 74.48 | 74.48 |
| AT5G61900.3 | Thale cress | cytosol | 72.24 | 72.49 |
| CDX98983 | Canola | cytosol, plastid | 30.34 | 71.84 |
| Bra010041.1-P | Field mustard | cytosol | 71.38 | 71.38 |
| CDY00235 | Canola | cytosol | 71.38 | 71.38 |
| Solyc06g068840.2.1 | Tomato | cytosol | 70.52 | 70.88 |
| CDX86951 | Canola | cytosol | 70.69 | 70.69 |
| Bra029301.1-P | Field mustard | cytosol, plastid | 70.69 | 70.57 |
| CDX70026 | Canola | cytosol | 69.83 | 68.76 |
| Bra009273.1-P | Field mustard | cytosol | 69.66 | 68.59 |
| CDX98984 | Canola | cytosol | 69.14 | 68.31 |
| CDX78287 | Canola | cytosol | 69.14 | 68.31 |
| Bra005931.1-P | Field mustard | cytosol | 69.14 | 68.31 |
| GSMUA_AchrUn_... | Banana | cytosol, golgi, plastid | 51.38 | 68.04 |
| AT5G07300.1 | Thale cress | cytosol | 68.62 | 67.92 |
| CDX81044 | Canola | cytosol | 68.62 | 67.8 |
| Os02t0521300-01 | Rice | plasma membrane | 63.97 | 63.53 |
| KXG30293 | Sorghum | cytosol | 61.9 | 62.11 |
| TraesCS6B01G235200.1 | Wheat | plastid | 61.55 | 61.87 |
| TraesCS6D01G176800.1 | Wheat | cytosol, nucleus, plastid | 61.21 | 61.85 |
| Zm00001d016615_P002 | Maize | plasma membrane | 57.93 | 61.76 |
| TraesCS6A01G189800.1 | Wheat | cytosol | 61.03 | 61.67 |
| KRH68626 | Soybean | cytosol | 57.93 | 57.93 |
| KRH68625 | Soybean | cytosol | 58.97 | 57.87 |
| KRG96891 | Soybean | cytosol | 58.62 | 57.24 |
| HORVU6Hr1G041140.14 | Barley | mitochondrion | 60.86 | 54.81 |
| AT5G61910.4 | Thale cress | cytosol | 72.24 | 31.13 |
| KRH07106 | Soybean | cytosol, plastid | 15.34 | 30.58 |
| KRG94356 | Soybean | nucleus | 17.59 | 23.83 |
| KRH43661 | Soybean | cytosol | 13.28 | 22.92 |
| KRH63659 | Soybean | cytosol, mitochondrion, nucleus, plastid | 16.72 | 22.72 |
| KRG97516 | Soybean | golgi, plasma membrane | 17.93 | 22.66 |
| KRH31355 | Soybean | golgi, plasma membrane | 17.76 | 22.25 |
| KRH54288 | Soybean | cytosol, mitochondrion, nucleus, plastid | 16.38 | 22.2 |
| KRH43098 | Soybean | endoplasmic reticulum, golgi | 17.41 | 21.96 |
| KRH59243 | Soybean | endoplasmic reticulum, golgi | 17.41 | 21.96 |
| KRH59596 | Soybean | nucleus | 15.69 | 21.36 |
| KRH64018 | Soybean | nucleus | 15.86 | 21.3 |
| KRH13149 | Soybean | cytosol, plastid | 14.66 | 20.38 |
| KRH58251 | Soybean | nucleus | 17.24 | 20.37 |
| KRG93947 | Soybean | nucleus | 17.24 | 20.16 |
| KRH44829 | Soybean | nucleus, plastid | 14.66 | 20.0 |
| KRH40948 | Soybean | nucleus | 12.24 | 19.89 |
| KRH53919 | Soybean | nucleus | 10.52 | 16.27 |
| KRG95016 | Soybean | nucleus, peroxisome, plasma membrane | 9.48 | 15.19 |
| KRH44837 | Soybean | extracellular, golgi | 9.48 | 10.66 |
| KRH44834 | Soybean | plasma membrane | 8.97 | 10.61 |
| KRH13085 | Soybean | extracellular, vacuole | 9.48 | 10.54 |
| KRH13151 | Soybean | nucleus, vacuole | 9.48 | 10.3 |
| KRH07102 | Soybean | cytosol | 2.24 | 9.29 |
Protein Annotations
| EntrezGene:100807801 | Gene3D:2.60.40.150 | MapMan:27.2.7 | EMBL:ACUP02004748 | InterPro:BONZAI | InterPro:C2B_Copine |
| InterPro:C2_dom | InterPro:C2_domain_sf | InterPro:Copine | EnsemblPlantsGene:GLYMA_08G007500 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005544 | GO:GO:0008150 | GO:GO:0008219 | GO:GO:0008289 | GO:GO:0009987 | GO:GO:0060548 |
| UniProt:I1KP22 | InterPro:IPR000008 | InterPro:IPR002035 | InterPro:IPR035892 | InterPro:IPR036465 | EnsemblPlants:KRH41052 |
| ProteinID:KRH41052 | ProteinID:KRH41052.1 | PFAM:PF00168 | PFAM:PF07002 | PFscan:PS50004 | PFscan:PS50234 |
| PANTHER:PTHR10857 | PANTHER:PTHR10857:SF108 | SMART:SM00239 | SMART:SM00327 | SUPFAM:SSF49562 | SUPFAM:SSF53300 |
| UniParc:UPI0002337E21 | InterPro:VWF_A | InterPro:vWFA_dom_sf | : | : | : |
Description
hypothetical protein
Coordinates
chr8:-:563990..572060
Molecular Weight (calculated)
63870.2 Da
IEP (calculated)
5.488
GRAVY (calculated)
-0.099
Length
580 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCCSDVAG GQSAIGGTAA GHLNPANAPN DAVDRFLRSR GYNGLFSQIE LSFSASGLRD RDVLSKSDPM MVLYARGKNA ALTELGRTEV ILNSLNPTWI
101: TKHTLIYNFE VVQVLVFRVY DVDTQFHNID VKMLKLEEQQ YLGEATCALS EIITKFDRSM TLDLHRREDS IRSTQSQNCG KLLVHAEECV SSKTTIEMIL
201: RCSDLEYRDL FSRSDPFLLL SKVVEGGSHI PICKTEVIKN DHNPIWKPVF LNIQQVGSKE SPLIIECYNF NSNGKHDLMG KVQKSLVELE KLYSGGQGEN
301: FISSAPAGHN SHNKVLKSQL FVDKFSESIQ YSFLDYLAGG FELNFMVAID FTASNGNPRL PDSLHYIDPS GRPNAYQRAV LEVGEVLQYY DSDKRFPTWG
401: FGARPIDAPV SHCFNLNGSS HCCEVEGIQG IMMAYTSALL NVSLAGPTLF GPVISNAALI ASQSVANGGR KYFVLLIITD GVVTDLQETK DALVKASDLP
501: LSILIVGVGG ADFKEMEILD ADKGERLESS SGRVASRDIV QFVPFRDVQS GEISVVQALL AELPTQFLSY MRSRNILPNS
101: TKHTLIYNFE VVQVLVFRVY DVDTQFHNID VKMLKLEEQQ YLGEATCALS EIITKFDRSM TLDLHRREDS IRSTQSQNCG KLLVHAEECV SSKTTIEMIL
201: RCSDLEYRDL FSRSDPFLLL SKVVEGGSHI PICKTEVIKN DHNPIWKPVF LNIQQVGSKE SPLIIECYNF NSNGKHDLMG KVQKSLVELE KLYSGGQGEN
301: FISSAPAGHN SHNKVLKSQL FVDKFSESIQ YSFLDYLAGG FELNFMVAID FTASNGNPRL PDSLHYIDPS GRPNAYQRAV LEVGEVLQYY DSDKRFPTWG
401: FGARPIDAPV SHCFNLNGSS HCCEVEGIQG IMMAYTSALL NVSLAGPTLF GPVISNAALI ASQSVANGGR KYFVLLIITD GVVTDLQETK DALVKASDLP
501: LSILIVGVGG ADFKEMEILD ADKGERLESS SGRVASRDIV QFVPFRDVQS GEISVVQALL AELPTQFLSY MRSRNILPNS
0001: METEMDFSDG EQTNGNSHVT ASQYFAPPGY NRSLVAAYGN GNTTIGLEKG IERRLDHHEQ LPGYIFMCNG RTKTDCYRYR VFGIPRGGKD VVESIKPGMK
0101: LFLYDFEKRL LYGVYEATVG GRLDIEPEAF EGKYPAQVGF RIVMNCLPLT ENTFKSAIYE NYKGSKFKQE LSPHQVMSLL SLFRSFTSPE LDLLPHRLAS
0201: RASAPRTLSF EERFIAATHL RNASSVLDPL SARHVEPRLG SVMAHQPVPR TSLLQHSYFR QDDYTTPPRE SLSNLNQPYY PTEARQLRLL GDPSRSDSPR
0301: SEPPRSSIQD PQLKYLTILS NIRRYGSASD RLASENEYHP ATPSEKDQFA VPYSDNKNYP STLSGSEHPS ASAANGSVYR SEFYNSASQK EGEASQQHEI
0401: PAGTYHHPEA STVSNTTKSM QPDMQAVSVA QSHTETAGYP TPAHGEASQP PAGAIGYTHQ PQSVAGNYST HSQPGNVEES TQSYAGTDSY SQQQYYAAMG
0501: PTTQLHAGGY IQKPHEIGYS QQPHDAATGY SQQPHDAATG YSQQPHDAAT GYSQQPHAAS TGYSQQTYAA ATGYTQQPHA AAAGYTQQPH AAATGYSQQP
0601: HAAATAHAQQ PYAAATAHAQ QLHAVATGYA LQLHAAATGY AQQPHAAATG YALQPHAQAV EYTMQPHAQA VGYMPQYHAH AVEIGMQCIS LITLRQQMQP
0701: QRIIKHLKTL KQSVATLDLR NLCVMGAEAW TRTGALSGKE GQGHKTRVSS SVYCTFESAV FFVGKSKIMG NCCSDVASGA GATAGVGGSG SSAALGATND
0801: ALDYYLKSKG FNGLFSQIEL SFSASNLRDR DVLSKSDPMV VVYQKEKDAT LSEVFRSEVV LNSLAPKWIK KFIVAYHFET VQTLVFRVYD VDTKFQNSRE
0901: EMLKLDEQQF LGEATCALSE IITKSTRTST LELKRKDGFA PQAQPHHGKL IIHAEESLAS KISTEIVFRC SNLESKDLFS KSDPFLVVSK IVEHGTPIPV
1001: SKTEVRKNDL NPIWKPVFLS VQQVGSKDSP VIIECSDFNS NGKHSLIGKV QKSLSDLEKL HLAGQGINFS LPTGAGQNKV LKSQLFVDKF TETVHHTFLE
1101: YLASGFELNF MVAIDFTASN GNPRLPDSLH YIDPSGRLNA YQRAIMDVGE VLQFYDSDKR FPAWGFGARP IDAPVSHCFN LNGSSSYSEV DGIQGIMTSY
1201: TSALFNVSLA GPTLFGPVIN AAAMIASASL AQGSRKYYVL LIITDGVITD LQETKDALVS ASDLPLSILI VGVGGADFKE MEILDADKGE RLESSSGRLA
1301: SRDIVQFVAL RDVQYGEISV VQALLAELPS QFLTYMRIRN MKPIPP
0101: LFLYDFEKRL LYGVYEATVG GRLDIEPEAF EGKYPAQVGF RIVMNCLPLT ENTFKSAIYE NYKGSKFKQE LSPHQVMSLL SLFRSFTSPE LDLLPHRLAS
0201: RASAPRTLSF EERFIAATHL RNASSVLDPL SARHVEPRLG SVMAHQPVPR TSLLQHSYFR QDDYTTPPRE SLSNLNQPYY PTEARQLRLL GDPSRSDSPR
0301: SEPPRSSIQD PQLKYLTILS NIRRYGSASD RLASENEYHP ATPSEKDQFA VPYSDNKNYP STLSGSEHPS ASAANGSVYR SEFYNSASQK EGEASQQHEI
0401: PAGTYHHPEA STVSNTTKSM QPDMQAVSVA QSHTETAGYP TPAHGEASQP PAGAIGYTHQ PQSVAGNYST HSQPGNVEES TQSYAGTDSY SQQQYYAAMG
0501: PTTQLHAGGY IQKPHEIGYS QQPHDAATGY SQQPHDAATG YSQQPHDAAT GYSQQPHAAS TGYSQQTYAA ATGYTQQPHA AAAGYTQQPH AAATGYSQQP
0601: HAAATAHAQQ PYAAATAHAQ QLHAVATGYA LQLHAAATGY AQQPHAAATG YALQPHAQAV EYTMQPHAQA VGYMPQYHAH AVEIGMQCIS LITLRQQMQP
0701: QRIIKHLKTL KQSVATLDLR NLCVMGAEAW TRTGALSGKE GQGHKTRVSS SVYCTFESAV FFVGKSKIMG NCCSDVASGA GATAGVGGSG SSAALGATND
0801: ALDYYLKSKG FNGLFSQIEL SFSASNLRDR DVLSKSDPMV VVYQKEKDAT LSEVFRSEVV LNSLAPKWIK KFIVAYHFET VQTLVFRVYD VDTKFQNSRE
0901: EMLKLDEQQF LGEATCALSE IITKSTRTST LELKRKDGFA PQAQPHHGKL IIHAEESLAS KISTEIVFRC SNLESKDLFS KSDPFLVVSK IVEHGTPIPV
1001: SKTEVRKNDL NPIWKPVFLS VQQVGSKDSP VIIECSDFNS NGKHSLIGKV QKSLSDLEKL HLAGQGINFS LPTGAGQNKV LKSQLFVDKF TETVHHTFLE
1101: YLASGFELNF MVAIDFTASN GNPRLPDSLH YIDPSGRLNA YQRAIMDVGE VLQFYDSDKR FPAWGFGARP IDAPVSHCFN LNGSSSYSEV DGIQGIMTSY
1201: TSALFNVSLA GPTLFGPVIN AAAMIASASL AQGSRKYYVL LIITDGVITD LQETKDALVS ASDLPLSILI VGVGGADFKE MEILDADKGE RLESSSGRLA
1301: SRDIVQFVAL RDVQYGEISV VQALLAELPS QFLTYMRIRN MKPIPP
Arabidopsis Description
DCD (Development and Cell Death) domain protein [Source:UniProtKB/TrEMBL;Acc:F4K518]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.