CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, plasma membrane

Predictor Summary:

nucleus 3
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07102	Soybean	cytosol	34.53	89.29
KRG94356	Soybean	nucleus	69.06	58.41
TraesCS5B01G111900.1	Wheat	cytosol	38.12	57.26
KRH58251	Soybean	nucleus	59.67	43.99
KRG93947	Soybean	nucleus	59.12	43.15
VIT_14s0066g00290.t01	Wine grape	mitochondrion	54.42	42.73
KRH54288	Soybean	cytosol, mitochondrion, nucleus, plastid	50.0	42.29
KRH63659	Soybean	cytosol, mitochondrion, nucleus, plastid	49.72	42.15
KRH43661	Soybean	cytosol	38.4	41.37
EES04073	Sorghum	nucleus	51.66	40.74
Os01t0908700-01	Rice	plasma membrane, plastid	50.0	40.58
GSMUA_Achr8P01300_001	Banana	nucleus	48.34	40.32
CDX69581	Canola	nucleus, plastid	51.66	40.13
CDY09854	Canola	nucleus, plastid	51.66	40.13
Bra008758.1-P	Field mustard	nucleus	51.38	39.91
CDX85597	Canola	cytosol, plastid	49.72	39.91
Bra023465.1-P	Field mustard	cytosol, plastid	49.72	39.91
CDX91935	Canola	cytosol	50.28	39.82
CDY37509	Canola	cytosol	50.55	39.78
CDY49066	Canola	cytosol	50.55	39.78
Bra000997.1-P	Field mustard	nucleus	50.28	39.74
CDX74310	Canola	cytosol	50.28	39.74
Bra039105.1-P	Field mustard	nucleus	50.0	39.69
TraesCS3B01G449200.1	Wheat	cytosol	51.1	39.61
TraesCS3D01G408900.1	Wheat	cytosol	50.83	39.48
CDX91062	Canola	cytosol, plastid	49.17	39.38
CDX70564	Canola	cytosol, plastid	51.1	39.28
Zm00001d042437_P005	Maize	cytosol	51.1	39.19
KRH07106	Soybean	cytosol, plastid	31.49	39.18
KRH43098	Soybean	endoplasmic reticulum, golgi	49.72	39.13
Bra006253.1-P	Field mustard	nucleus, plastid	50.83	39.07
KRG97516	Soybean	golgi, plasma membrane	49.45	39.0
GSMUA_Achr9P29460_001	Banana	nucleus	50.28	38.89
CDX78576	Canola	cytosol, plastid	50.55	38.85
KRH59243	Soybean	endoplasmic reticulum, golgi	48.9	38.48
Solyc02g093520.2.1	Tomato	nucleus	52.21	38.41
KRH31355	Soybean	golgi, plasma membrane	48.62	38.01
PGSC0003DMT400032842	Potato	mitochondrion	48.9	36.42
Zm00001d012101_P002	Maize	mitochondrion	51.1	36.42
GSMUA_Achr6P06710_001	Banana	nucleus	46.13	36.3
Zm00001d048784_P001	Maize	cytosol	30.66	36.04
KRH59596	Soybean	nucleus	41.71	35.45
KRH64018	Soybean	nucleus	40.88	34.26
TraesCS3A01G414400.2	Wheat	cytosol	41.16	34.17
KRH13149	Soybean	cytosol, plastid	38.12	33.09
KRH44829	Soybean	nucleus, plastid	38.4	32.71
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	47.24	31.61
HORVU5Hr1G039100.3	Barley	endoplasmic reticulum, extracellular, golgi	46.13	30.98
Os12t0288400-01	Rice	endoplasmic reticulum, extracellular, vacuole	46.69	30.95
TraesCS5D01G122000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	45.3	30.54
KRH40948	Soybean	nucleus	30.11	30.53
HORVU3Hr1G092250.6	Barley	plastid	46.69	30.45
TraesCS5A01G103800.2	Wheat	endoplasmic reticulum, extracellular, golgi	45.03	29.16
KRH53919	Soybean	nucleus	30.11	29.07
OQU79014	Sorghum	plastid	39.5	27.03
AT1G24545.1	Thale cress	cytosol	11.33	22.53
KRH20017	Soybean	cytosol	14.36	19.05
KRH13151	Soybean	nucleus, vacuole	15.47	10.49
KRH13085	Soybean	extracellular, vacuole	14.36	9.96
KRH54085	Soybean	cytosol	15.75	9.86
KRH68626	Soybean	cytosol	15.75	9.83
KRH44837	Soybean	extracellular, golgi	13.81	9.69
KRH68625	Soybean	cytosol	15.75	9.64
KRH41052	Soybean	endoplasmic reticulum	15.19	9.48
KRG96891	Soybean	cytosol	15.47	9.43
KRH63871	Soybean	cytosol	15.47	9.0
KRH44834	Soybean	plasma membrane	9.67	7.14

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	EMBL:ACUP02012070	InterPro:Copine	EnsemblPlantsGene:GLYMA_19G124300
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR001841	InterPro:IPR013083	InterPro:IPR036465
UniProt:K7MY19	EnsemblPlants:KRG95016	ProteinID:KRG95016	ProteinID:KRG95016.1	PFAM:PF07002	PFAM:PF13920
PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF28	SUPFAM:SSF53300	SUPFAM:SSF57850	TMHMM:TMhelix
UniParc:UPI000296CB2E	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:vWFA_dom_sf	:	:

Description

hypothetical protein

Coordinates

chr19:-:38243468..38248943

Molecular Weight (calculated)

40879.4 Da

IEP (calculated)

7.268

GRAVY (calculated)

-0.083

Length

362 amino acids

Sequence
(BLAST)

001: MHQHTIKMSS VSIRVKDFAD GFEDVLSRYR EIVPHLRLAG PTSFAPIIEM AMSIVEQSGG QYHVLVIIAD GQVTKNVDTK HGRLSPQEQK TVDTIVAVSK
101: FPLSIILVGV GDGLWDMMKE FDDNIPARAF DNFQFVNFTE IMSKSIPPSR KEAAFALAAL MEIPSQYMAA IELNLLGSRQ ANAPQRHALP PPTYSSRAAR
201: FEPSIPPQHG NSHPFATAPS APSSTYDNQL CPICLSNAKD MAFGCGHQTC CECGQDLQSC PMYRSPINTI IKLYNRMWLG NWYFFSYFCV VPVTILWFFL
301: DSLNSSKVRS RCGWVQHLIR CMFPDMKRGI LHQLFYIYSF DELYFDAVPL EQKPVKEMQI GQ

Best Arabidopsis Sequence Match ( AT3G01650.1 )
(BLAST)

001: MGGGNSKEES SSPSSSSWAS HQSYPQYGPD SYNYPPPPTY APAPSPAPAP APVPAPSPAS SYGPQYSQEG YASQPNNPPP PTYAPAPSPA SSYGHQYSQE
101: GYASAASQPN YPPPPSQSQV ADRKKFDRRY SKISDNYSSL LQVSEALGRA GLESSNLIVG IDFTKSNEWT GAKSFNRKSL HHLSNTPNPY EQAITIIGRT
201: LAAFDEDNLI PCYGFGDAST HDQDVFSFYP EGRFCNGFEE VLARYREIVP QLKLAGPTSF APIIEMAMTV VEQSSGQYHV LVIIADGQVT RSVDTEHGRL
301: SPQEQKTVDA IVKASTLPLS IVLVGVGDGP WDMMQEFDDN IPARAFDNFQ FVNFTEIMSK NKDQSRKETE FALSALMEIP PQYKATIELN LLGVRNGNIP
401: QRIPLPPPVQ SGSSFSSSRI PNFEPSVPPY PFESKQMSSA DDIQLCPICL SNPKNMAFGC GHQTCCECGP DLKVCPICRA PIQTRIKLY

Arabidopsis Description

RGLG1E3 ubiquitin-protein ligase RGLG1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.