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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 3
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d042437_P005 Maize cytosol 93.9 91.31
Os01t0908700-01 Rice plasma membrane, plastid 83.44 85.87
Zm00001d012101_P002 Maize mitochondrion 93.25 84.25
TraesCS3B01G449200.1 Wheat cytosol 84.97 83.51
TraesCS3D01G408900.1 Wheat cytosol 84.31 83.05
TraesCS3A01G414400.2 Wheat cytosol 76.25 80.28
Zm00001d048784_P001 Maize cytosol 50.11 74.68
GSMUA_Achr8P01300_001 Banana nucleus 67.54 71.43
GSMUA_Achr9P29460_001 Banana nucleus 71.9 70.51
KRH63659 Soybean cytosol, mitochondrion, nucleus, plastid 62.96 67.68
VIT_01s0137g00460.t01 Wine grape nucleus 65.14 67.65
KRH54288 Soybean cytosol, mitochondrion, nucleus, plastid 62.96 67.52
VIT_17s0000g09640.t01 Wine grape cytosol, mitochondrion, nucleus, plastid 63.62 67.44
CDY27584 Canola cytosol 33.33 65.95
HORVU3Hr1G092250.6 Barley plastid 79.74 65.95
KRG94356 Soybean nucleus 61.22 65.65
CDX84957 Canola cytosol 54.9 65.45
Bra032793.1-P Field mustard nucleus 54.47 65.44
KRH43098 Soybean endoplasmic reticulum, golgi 64.92 64.78
Solyc03g111870.2.1 Tomato nucleus 61.66 64.76
KRH59243 Soybean endoplasmic reticulum, golgi 64.49 64.35
Bra023465.1-P Field mustard cytosol, plastid 62.09 63.19
CDX85597 Canola cytosol, plastid 62.09 63.19
VIT_14s0066g00290.t01 Wine grape mitochondrion 62.96 62.69
CDX91062 Canola cytosol, plastid 61.44 62.39
Bra000997.1-P Field mustard nucleus 62.09 62.23
CDX74310 Canola cytosol 62.09 62.23
CDY49066 Canola cytosol 62.31 62.17
Bra039105.1-P Field mustard nucleus 61.66 62.06
Solyc02g093520.2.1 Tomato nucleus 66.45 61.99
CDY37509 Canola cytosol 61.87 61.74
CDX91935 Canola cytosol 61.44 61.71
CDX69581 Canola nucleus, plastid 62.53 61.59
CDY09854 Canola nucleus, plastid 62.53 61.59
KXG20338 Sorghum nucleus 59.91 61.52
CDY01855 Canola cytosol, plastid 59.04 61.45
Bra008758.1-P Field mustard nucleus 62.31 61.37
AT5G14420.2 Thale cress nucleus, plastid 62.53 61.32
Bra004260.1-P Field mustard plastid 58.82 61.22
KRG97516 Soybean golgi, plasma membrane 61.22 61.22
CDY56212 Canola plastid 58.61 61.0
PGSC0003DMT400032842 Potato mitochondrion 64.49 60.91
KXG25698 Sorghum cytosol 53.16 60.7
KRH58251 Soybean nucleus 64.92 60.69
CDX70564 Canola cytosol, plastid 62.09 60.51
CDX78576 Canola cytosol, plastid 61.87 60.3
KRH31355 Soybean golgi, plasma membrane 60.57 60.04
Bra006253.1-P Field mustard nucleus, plastid 61.44 59.87
KRG93947 Soybean nucleus 64.49 59.68
AT1G67800.2 Thale cress plasma membrane 58.17 58.94
AT3G01650.2 Thale cress cytosol 61.87 58.08
KXG34172 Sorghum nucleus 47.71 56.59
EES13310 Sorghum mitochondrion 50.11 56.37
EER98488 Sorghum endoplasmic reticulum, golgi 36.17 53.04
KRG95016 Soybean nucleus, peroxisome, plasma membrane 40.74 51.66
CDY27585 Canola cytosol 14.16 50.0
OQU79014 Sorghum plastid 55.56 48.2
AT1G24545.1 Thale cress cytosol 17.43 43.96
OQU79015 Sorghum mitochondrion 7.41 40.96
PGSC0003DMT400039186 Potato cytosol 61.66 29.48
KXG21864 Sorghum cytosol 22.66 17.78
KXG30293 Sorghum cytosol 19.17 15.22
Protein Annotations
MapMan:19.2.2.1.5.3.2MapMan:19.2.2.1.6.2Gene3D:3.30.40.10EntrezGene:8078706UniProt:C5XFJ5InterPro:Copine
EnsemblPlants:EES04073ProteinID:EES04073ProteinID:EES04073.1InterPro:IPR001841InterPro:IPR002035InterPro:IPR013083
InterPro:IPR036465PFAM:PF07002PFAM:PF13920PFscan:PS50089PANTHER:PTHR10857PANTHER:PTHR10857:SF28
SMART:SM00327EnsemblPlantsGene:SORBI_3003G396000SUPFAM:SSF53300SUPFAM:SSF57850unigene:Sbi.15629UniParc:UPI0001A854CC
InterPro:VWF_ARefSeq:XP_002458953.1InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDSEG:segInterPro:vWFA_dom_sf
Description
hypothetical protein
Coordinates
chr3:-:70622748..70626991
Molecular Weight (calculated)
50124.4 Da
IEP (calculated)
5.925
GRAVY (calculated)
-0.471
Length
459 amino acids
Sequence
(BLAST)
001: MGNHSSRDGS KHGRRQPSFQ QQSSAQWGAG GGYYAQDPRA DYYGAPGSQQ GGGYAAPYPA PAYQPTAAAA PAPQAAKPRQ LDRRYSRIAD DYHSVDQVTD
101: ALAQAGLESS NLIVGIDFTK SNEWTGKFSF HGRSLHHISN TPNPYEQAIS IIGRTLSKFD EDNLIPCFGF GDASTHDQDV FCFSPDERPC NGFEEALDRY
201: RELVPHLRLA GPTSFAPIIE MAMTIVEQSG GQYHVLLIIA DGQVTRSVDT ASGQLSSQEQ KTVDAIVKAS ELPLSIVLVG VGDGPWDMMK EFDDNIPARA
301: FDNFQFVNFS EIMSKNMAQS RKEATFALSA LMEIPQQYKA TVELGILGRR SFKSPDRVPL PPPTGSYDAY SYSSKSFSKP TTYPQSSSSA SPYPHYETPH
401: TATPVAPSST YDNQVCPICL VNPKDMAFGC GHQTCCDCGQ SLESCPICRT PITTRIKLY
Best Arabidopsis Sequence Match ( AT5G14420.1 )
(BLAST)
001: MGTGNSKENW RQSSFRSTSA SSASPSSSSW ASQQSYPQYG AESYNYPPPP SYAQPPEYTQ PPPPLYSTQP YSAPSYSAPP SQSYGSDNKK RLERKYSKIS
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY
Arabidopsis Description
RGLG2E3 ubiquitin-protein ligase RGLG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY87]
SUBAcon: [plastid,nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.