CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37509	Canola	cytosol	99.13	99.13
CDY49067	Canola	extracellular	30.22	92.67
CDX91935	Canola	cytosol	91.52	92.12
CDX74310	Canola	cytosol	91.52	91.92
AT3G01650.2	Thale cress	cytosol	84.35	79.35
CDX85597	Canola	cytosol, plastid	74.35	75.83
CDY09854	Canola	nucleus, plastid	76.52	75.54
CDX91062	Canola	cytosol, plastid	73.7	75.0
CDX70564	Canola	cytosol, plastid	76.74	74.95
CDX69581	Canola	nucleus, plastid	75.87	74.89
CDX78576	Canola	cytosol, plastid	76.09	74.31
KRG94356	Soybean	nucleus	63.26	67.99
VIT_14s0066g00290.t01	Wine grape	mitochondrion	66.96	66.81
CDX84957	Canola	cytosol	54.57	65.19
CDY27584	Canola	cytosol	32.61	64.66
Zm00001d048784_P001	Maize	cytosol	42.39	63.31
GSMUA_Achr8P01300_001	Banana	nucleus	59.35	62.9
Os01t0908700-01	Rice	plasma membrane, plastid	60.87	62.78
GSMUA_Achr9P29460_001	Banana	nucleus	63.7	62.61
KRH58251	Soybean	nucleus	66.74	62.53
EES04073	Sorghum	nucleus	62.17	62.31
KRG93947	Soybean	nucleus	67.17	62.3
TraesCS5B01G111900.1	Wheat	cytosol	32.61	62.24
Solyc02g093520.2.1	Tomato	nucleus	66.52	62.2
CDY01855	Canola	cytosol, plastid	59.57	62.13
GSMUA_Achr6P06710_001	Banana	nucleus	61.74	61.74
CDY56212	Canola	plastid	59.13	61.68
CDX84471	Canola	cytosol, mitochondrion	48.48	61.43
CDY43775	Canola	cytosol, mitochondrion	48.7	61.04
TraesCS3B01G449200.1	Wheat	cytosol	61.96	61.03
TraesCS3D01G408900.1	Wheat	cytosol	61.74	60.94
Zm00001d042437_P005	Maize	cytosol	62.17	60.59
CDY31343	Canola	cytosol	47.83	59.95
CDY39835	Canola	cytosol	47.83	59.95
PGSC0003DMT400032842	Potato	mitochondrion	63.04	59.67
TraesCS3A01G414400.2	Wheat	cytosol	54.35	57.34
Zm00001d012101_P002	Maize	mitochondrion	62.39	56.5
CDX79314	Canola	cytosol, plastid	45.22	54.88
CDY27585	Canola	cytosol	15.43	54.62
CDX67997	Canola	cytosol	44.78	54.5
CDY50776	Canola	cytosol	8.7	54.05
CDX88533	Canola	plastid	46.96	53.6
CDX87387	Canola	plastid	46.74	53.48
CDX99619	Canola	cytosol	7.83	52.94
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	60.22	51.2
Os12t0288400-01	Rice	endoplasmic reticulum, extracellular, vacuole	60.22	50.73
KRG95016	Soybean	nucleus, peroxisome, plasma membrane	39.78	50.55
TraesCS5D01G122000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	58.48	50.09
HORVU5Hr1G039100.3	Barley	endoplasmic reticulum, extracellular, golgi	57.83	49.35
TraesCS5A01G103800.2	Wheat	endoplasmic reticulum, extracellular, golgi	58.7	48.3
HORVU3Hr1G092250.6	Barley	plastid	58.04	48.11
OQU79014	Sorghum	plastid	53.48	46.5
CDX85680	Canola	mitochondrion, plastid	10.43	32.65
CDY52873	Canola	plastid	20.65	31.05
CDX72278	Canola	plastid	23.04	28.57
CDX98983	Canola	cytosol, plastid	14.35	26.94
CDY03984	Canola	cytosol	14.78	22.9
CDY00235	Canola	cytosol	21.52	17.07
CDX70026	Canola	cytosol	21.74	16.98
CDX98984	Canola	cytosol	21.52	16.87
CDY06335	Canola	cytosol	21.09	16.64
CDX86951	Canola	cytosol	20.87	16.55
CDX78287	Canola	cytosol	21.09	16.52
CDY22660	Canola	cytosol	20.87	16.52
CDX81044	Canola	cytosol	20.87	16.35
CDY25816	Canola	cytosol	1.3	12.24

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	GO:A0A078IGF0	UniProt:A0A078IGF0	EnsemblPlants:CDY49066
ProteinID:CDY49066	ProteinID:CDY49066.1	InterPro:Copine	EnsemblPlantsGene:GSBRNA2T00092287001	InterPro:IPR001841	InterPro:IPR002035
InterPro:IPR013083	InterPro:IPR036465	PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857
PANTHER:PTHR10857:SF28	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0004EEAE18	InterPro:VWF_A
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

BnaC05g48940DBnaC05g48940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IGF0]

Coordinates

chrLK032808:+:114084..116388

Molecular Weight (calculated)

50521.1 Da

IEP (calculated)

5.277

GRAVY (calculated)

-0.524

Length

460 amino acids

Sequence
(BLAST)

001: MGGGNSKEDW RQEPPSSSSS SSSWASHQSY PQSGPGSYNY PPPPSYSPAP SFGGHPPSYS QEEQGYAYPY PPPQPQPQPS QTHAAPSDRK KFDRRYSKIS
101: DNYVSLDQVS EALGRAGLES SNLILGIDFT KSNEWTGAKS FSKKSLHHIS NTLNPYEQAI TIIGRTLAAF DEDNLIPCFG FGDASTHDQD VFSFYPEGRS
201: CNGFEQVLAR YRDIVPHLKL AGPTSFAPII EMAMTVVEQS SGQYHVLVII ADGQVTRSVD TEHGQLSPQE QKTVDAIVKA SALPLSIVLV GVGDGPWDMM
301: QEFDDNIPSR AFDNFQFVNF TEIMSKNKEQ SRKETEFALS ALMEIPPQYK ATIELGLLGR RNGNIPERIP LPPPVQGGST FFNPSKASPT PSFEPSVPTY
401: PMESKNMTTS VDDNQLCPIC LSNPKNMAFG CGHQTCCECG PDLKVCPICR APIQTRIKLY

Best Arabidopsis Sequence Match ( AT3G01650.1 )
(BLAST)

001: MGGGNSKEES SSPSSSSWAS HQSYPQYGPD SYNYPPPPTY APAPSPAPAP APVPAPSPAS SYGPQYSQEG YASQPNNPPP PTYAPAPSPA SSYGHQYSQE
101: GYASAASQPN YPPPPSQSQV ADRKKFDRRY SKISDNYSSL LQVSEALGRA GLESSNLIVG IDFTKSNEWT GAKSFNRKSL HHLSNTPNPY EQAITIIGRT
201: LAAFDEDNLI PCYGFGDAST HDQDVFSFYP EGRFCNGFEE VLARYREIVP QLKLAGPTSF APIIEMAMTV VEQSSGQYHV LVIIADGQVT RSVDTEHGRL
301: SPQEQKTVDA IVKASTLPLS IVLVGVGDGP WDMMQEFDDN IPARAFDNFQ FVNFTEIMSK NKDQSRKETE FALSALMEIP PQYKATIELN LLGVRNGNIP
401: QRIPLPPPVQ SGSSFSSSRI PNFEPSVPPY PFESKQMSSA DDIQLCPICL SNPKNMAFGC GHQTCCECGP DLKVCPICRA PIQTRIKLY

Arabidopsis Description

RGLG1E3 ubiquitin-protein ligase RGLG1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.