CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85597	Canola	cytosol, plastid	96.02	96.23
CDX70564	Canola	cytosol, plastid	92.7	88.96
CDX69581	Canola	nucleus, plastid	90.93	88.2
CDY09854	Canola	nucleus, plastid	90.93	88.2
CDX78576	Canola	cytosol, plastid	91.81	88.11
AT5G14420.2	Thale cress	nucleus, plastid	89.16	86.11
CDX74310	Canola	cytosol	75.22	74.24
CDX91935	Canola	cytosol	74.78	73.96
CDY49066	Canola	cytosol	75.0	73.7
CDY37509	Canola	cytosol	74.56	73.26
CDY49067	Canola	extracellular	24.11	72.67
KRG94356	Soybean	nucleus	63.94	67.52
CDY27584	Canola	cytosol	34.29	66.81
CDX84957	Canola	cytosol	56.64	66.49
VIT_14s0066g00290.t01	Wine grape	mitochondrion	67.7	66.38
TraesCS5B01G111900.1	Wheat	cytosol	34.73	65.15
CDY01855	Canola	cytosol, plastid	63.5	65.08
CDY56212	Canola	plastid	62.83	64.4
Zm00001d048784_P001	Maize	cytosol	43.81	64.29
Os01t0908700-01	Rice	plasma membrane, plastid	61.95	62.78
Solyc02g093520.2.1	Tomato	nucleus	67.7	62.2
GSMUA_Achr9P29460_001	Banana	nucleus	64.16	61.97
GSMUA_Achr8P01300_001	Banana	nucleus	59.07	61.52
KRH58251	Soybean	nucleus	66.81	61.51
EES04073	Sorghum	nucleus	62.39	61.44
CDX84471	Canola	cytosol, mitochondrion	49.12	61.16
TraesCS3B01G449200.1	Wheat	cytosol	63.05	61.03
TraesCS3D01G408900.1	Wheat	cytosol	62.83	60.94
KRG93947	Soybean	nucleus	66.59	60.69
GSMUA_Achr6P06710_001	Banana	nucleus	61.73	60.65
CDY43775	Canola	cytosol, mitochondrion	49.12	60.49
CDY39835	Canola	cytosol	48.89	60.22
CDY31343	Canola	cytosol	48.89	60.22
Zm00001d042437_P005	Maize	cytosol	62.61	59.96
PGSC0003DMT400032842	Potato	mitochondrion	63.94	59.47
CDX79314	Canola	cytosol, plastid	48.23	57.52
TraesCS3A01G414400.2	Wheat	cytosol	55.09	57.11
CDX67997	Canola	cytosol	47.57	56.88
CDY50776	Canola	cytosol	9.07	55.41
Zm00001d012101_P002	Maize	mitochondrion	61.73	54.92
CDX88533	Canola	plastid	48.01	53.85
CDX87387	Canola	plastid	47.79	53.73
CDX99619	Canola	cytosol	7.96	52.94
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	62.83	52.5
CDY27585	Canola	cytosol	15.04	52.31
TraesCS5D01G122000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	61.73	51.96
Os12t0288400-01	Rice	endoplasmic reticulum, extracellular, vacuole	62.39	51.65
HORVU5Hr1G039100.3	Barley	endoplasmic reticulum, extracellular, golgi	61.5	51.58
TraesCS5A01G103800.2	Wheat	endoplasmic reticulum, extracellular, golgi	60.84	49.2
KRG95016	Soybean	nucleus, peroxisome, plasma membrane	39.38	49.17
HORVU3Hr1G092250.6	Barley	plastid	59.51	48.47
OQU79014	Sorghum	plastid	55.09	47.07
CDX85680	Canola	mitochondrion, plastid	10.62	32.65
CDY52873	Canola	plastid	21.46	31.7
CDX72278	Canola	plastid	23.89	29.11
CDX98983	Canola	cytosol, plastid	14.16	26.12
CDY03984	Canola	cytosol	16.15	24.58
CDY00235	Canola	cytosol	21.02	16.38
CDX86951	Canola	cytosol	20.58	16.03
CDX98984	Canola	cytosol	20.58	15.84
CDX70026	Canola	cytosol	20.58	15.79
CDX78287	Canola	cytosol	20.35	15.67
CDX81044	Canola	cytosol	20.13	15.5
CDY06335	Canola	cytosol	19.69	15.27
CDY22660	Canola	cytosol	19.47	15.15
CDY25816	Canola	cytosol	1.55	14.29

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	GO:A0A078DQ83	EnsemblPlants:CDX91062	ProteinID:CDX91062
ProteinID:CDX91062.1	InterPro:Copine	EnsemblPlantsGene:GSBRNA2T00151834001	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083
InterPro:IPR036465	PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF28
SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0004EF4CDC	InterPro:VWF_A	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:	:

Description

BnaC02g05350D

Coordinates

chrLK031865:+:599623..602787

Molecular Weight (calculated)

49774.5 Da

IEP (calculated)

6.181

GRAVY (calculated)

-0.493

Length

452 amino acids

Sequence
(BLAST)

001: MGTGNSKEKW RQRSSSSFRS ASSPPSSPWA SHQSYPPPPS YAPPPEYVQP PSPSYTTQPY SQPPPSQSYG NDKKRLERKY SKISDDYSSL DQVTEALAHA
101: GLESSNLIVG IDFTKSNEWT GARSFNRKSL HFIGNTSNPY EQAIAIIGRT LAAFDEDNLI PCYGFGDAST HDQDVFSFNP EDRFCNGFEE VLGRYKEIVP
201: QLKLAGPTSF APIIDMAMTI VEQSGGQYHV LVIIADGQVT RSVDTENGQL SPQELKTVDA IVQASKLPLS IVLVGVGDGP WDMMREFDDN IPARAFDNFQ
301: FVNFTEIMAK NKDQSLKETE FALSALMEIP QQYKATLELS LLGRRNGKIA ERFPLPPPMH GGASSYNKPK ANRVPSFKPS VPSYPTESYT VRSSPAPPAT
401: TSASDNRICP ICLSNPKDMA FGCGHQTCCD CGPDLQVCPI CRAPIQTRIK LY

Best Arabidopsis Sequence Match ( AT5G14420.1 )
(BLAST)

001: MGTGNSKENW RQSSFRSTSA SSASPSSSSW ASQQSYPQYG AESYNYPPPP SYAQPPEYTQ PPPPLYSTQP YSAPSYSAPP SQSYGSDNKK RLERKYSKIS
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY

Arabidopsis Description

RGLG2E3 ubiquitin-protein ligase RGLG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY87]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.