CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023465.1-P	Field mustard	cytosol, plastid	100.0	100.0
CDX91062	Canola	cytosol, plastid	96.23	96.02
CDX70564	Canola	cytosol, plastid	91.8	87.9
CDY09854	Canola	nucleus, plastid	90.69	87.77
CDX69581	Canola	nucleus, plastid	90.47	87.55
CDX78576	Canola	cytosol, plastid	90.91	87.05
AT5G14420.2	Thale cress	nucleus, plastid	88.69	85.47
CDX74310	Canola	cytosol	76.72	75.55
CDX91935	Canola	cytosol	76.27	75.27
CDY49066	Canola	cytosol	75.83	74.35
CDY37509	Canola	cytosol	75.39	73.91
CDY49067	Canola	extracellular	24.39	73.33
KRG94356	Soybean	nucleus	64.08	67.52
CDY27584	Canola	cytosol	34.59	67.24
VIT_14s0066g00290.t01	Wine grape	mitochondrion	68.07	66.59
CDX84957	Canola	cytosol	56.76	66.49
TraesCS5B01G111900.1	Wheat	cytosol	35.26	65.98
Zm00001d048784_P001	Maize	cytosol	44.57	65.26
CDY01855	Canola	cytosol, plastid	63.41	64.85
CDY56212	Canola	plastid	63.19	64.63
GSMUA_Achr9P29460_001	Banana	nucleus	64.75	62.39
Os01t0908700-01	Rice	plasma membrane, plastid	61.64	62.33
Solyc02g093520.2.1	Tomato	nucleus	67.85	62.2
EES04073	Sorghum	nucleus	63.19	62.09
KRH58251	Soybean	nucleus	67.18	61.71
TraesCS3B01G449200.1	Wheat	cytosol	63.41	61.24
TraesCS3D01G408900.1	Wheat	cytosol	63.19	61.16
CDX84471	Canola	cytosol, mitochondrion	49.22	61.16
GSMUA_Achr8P01300_001	Banana	nucleus	58.54	60.83
KRG93947	Soybean	nucleus	66.74	60.69
GSMUA_Achr6P06710_001	Banana	nucleus	61.86	60.65
CDY43775	Canola	cytosol, mitochondrion	49.22	60.49
Zm00001d042437_P005	Maize	cytosol	63.19	60.38
CDY31343	Canola	cytosol	49.0	60.22
CDY39835	Canola	cytosol	49.0	60.22
PGSC0003DMT400032842	Potato	mitochondrion	64.08	59.47
CDX79314	Canola	cytosol, plastid	48.78	58.05
CDX67997	Canola	cytosol	48.12	57.41
TraesCS3A01G414400.2	Wheat	cytosol	55.21	57.11
CDY50776	Canola	cytosol	9.09	55.41
Zm00001d012101_P002	Maize	mitochondrion	62.31	55.31
CDX88533	Canola	plastid	49.0	54.84
CDX87387	Canola	plastid	48.78	54.73
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	63.86	53.23
CDX99619	Canola	cytosol	7.98	52.94
TraesCS5D01G122000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	62.53	52.51
Os12t0288400-01	Rice	endoplasmic reticulum, extracellular, vacuole	63.41	52.38
HORVU5Hr1G039100.3	Barley	endoplasmic reticulum, extracellular, golgi	62.31	52.13
CDY27585	Canola	cytosol	14.86	51.54
TraesCS5A01G103800.2	Wheat	endoplasmic reticulum, extracellular, golgi	61.64	49.73
KRG95016	Soybean	nucleus, peroxisome, plasma membrane	39.91	49.72
HORVU3Hr1G092250.6	Barley	plastid	59.65	48.47
OQU79014	Sorghum	plastid	55.65	47.45
CDX85680	Canola	mitochondrion, plastid	10.64	32.65
CDY52873	Canola	plastid	21.29	31.37
CDX72278	Canola	plastid	23.73	28.84
CDX98983	Canola	cytosol, plastid	14.41	26.53
CDY03984	Canola	cytosol	15.96	24.24
CDY00235	Canola	cytosol	21.29	16.55
CDX86951	Canola	cytosol	20.84	16.21
CDX98984	Canola	cytosol	20.84	16.01
CDX70026	Canola	cytosol	20.84	15.96
CDX78287	Canola	cytosol	20.62	15.84
CDX81044	Canola	cytosol	20.4	15.67
CDY06335	Canola	cytosol	20.18	15.61
CDY22660	Canola	cytosol	19.96	15.49
CDY25816	Canola	cytosol	1.33	12.24

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	GO:A0A078D980	EnsemblPlants:CDX85597	ProteinID:CDX85597
ProteinID:CDX85597.1	InterPro:Copine	EnsemblPlantsGene:GSBRNA2T00143320001	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083
InterPro:IPR036465	PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF28
SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0002543568	InterPro:VWF_A	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:	:

Description

BnaA02g02160D

Coordinates

chrLK031842:+:823590..826460

Molecular Weight (calculated)

49664.5 Da

IEP (calculated)

6.507

GRAVY (calculated)

-0.490

Length

451 amino acids

Sequence
(BLAST)

001: MGTGNSKEKW RQRSSSSCRS SSSPWASHQS YPQYPPPPSY APPPEFAQPP SPSYTTQPYS QPPPSQSYGN DKKRLERKYS KISDDYSSLD QVTKALAHAG
101: LESSNLIVGI DFTKSNEWTG ARSFNRKSLH FIGNTPNPYE QAIAIIGRTL AAFDEDNLIP CYGFGDASTH DQDVFSFNPE ERFCNGFEEV LGRYKEIVPQ
201: LKLAGPTSFA PIIDMAMTIV EQSGGQYHVL VIIADGQVTR SVDTENGQLS PQELKTVDAI VQASKLPLSI VLVGVGDGPW DMMREFDDNI PARAFDNFQF
301: VNFTEIMAKK KAQSLKETEF ALSALMEIPQ QYKATLELSL LGRRNGKIAE RFPLPPPMQG GASSYNKPNA NRVPSFKPSV PSYPSESYTV RSSPAPPATT
401: SASDNQICPI CLSNPKDMAF GCGHQTCCEC GPDLQVCPIC RAPIQTRIKL Y

Best Arabidopsis Sequence Match ( AT5G14420.1 )
(BLAST)

001: MGTGNSKENW RQSSFRSTSA SSASPSSSSW ASQQSYPQYG AESYNYPPPP SYAQPPEYTQ PPPPLYSTQP YSAPSYSAPP SQSYGSDNKK RLERKYSKIS
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY

Arabidopsis Description

RGLG2E3 ubiquitin-protein ligase RGLG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY87]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.